version 0.3.2

TomKellyGenetics · Jan 18, 2020 · f0e443d · f0e443d
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diff --git a/CRAN-RELEASE b/CRAN-RELEASE
@@ -1,2 +1,2 @@
-This package was submitted to CRAN on 2019-07-23.
-Once it is accepted, delete this file and tag the release (commit 9927f9eefe).
+This package was submitted to CRAN on 2020-01-18.
+Once it is accepted, delete this file and tag the release (commit 4bad225648).
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: leiden
 Type: Package
 Title: R Implementation of Leiden Clustering Algorithm
-Version: 0.3.1.9001
-Date: 2019-07-23
+Version: 0.3.2
+Date: 2020-01-17
 Authors@R: c(person("S. Thomas", "Kelly", email = "tom.kelly@riken.jp", role = c("aut", "cre", "trl")),
            person("Vincent A.", "Traag", email = "v.a.traag@cwts.leidenuniv.nl", role = c("com")))
 Description: Implements the 'Python leidenalg' module to be called in R.

diff --git a/README.md b/README.md
@@ -1,6 +1,6 @@
 # Leiden Algorithm
 
-## leiden version 0.3.1
+## leiden version 0.3.2
 
 [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/leiden)](https://cran.r-project.org/package=leiden)
 [![Travis Build Status](https://travis-ci.org/TomKellyGenetics/leiden.svg?branch=master)](https://travis-ci.org/TomKellyGenetics/leiden)
@@ -274,15 +274,15 @@ Please cite this implementation R in if you use it:
 To cite the leiden package in publications use:
 
   S. Thomas Kelly (2019). leiden: R implementation of the Leiden algorithm. R
-  package version 0.3.1 https://github.com/TomKellyGenetics/leiden
+  package version 0.3.2 https://github.com/TomKellyGenetics/leiden
 
 A BibTeX entry for LaTeX users is
 
   @Manual{,
     title = {leiden: R implementation of the Leiden algorithm},
     author = {S. Thomas Kelly},
     year = {2018},
-    note = {R package version 0.3.1},
+    note = {R package version 0.3.2},
     url = {https://github.com/TomKellyGenetics/leiden},
   }
  ```

diff --git a/cran-comments.md b/cran-comments.md
@@ -12,9 +12,9 @@
 
 ## Updates
 
-Minor update to include parameters for find_partitions (python module).
+Minor update to include support for weighted igraph objects.
 
-This release is compatible with proposed changes to the Seurat (v3.0.3) package. This version will be a dependency of Seurat. This version of Seurat is not available for checking with revdep but has been checked locally after installing the develop version from GitHub.
+This release is compatible with proposed changes to the Seurat (v3.1.2) package. This version will be a dependency of Seurat. This version of Seurat is not available for checking with revdep but has been checked locally after installing the develop version from GitHub.
 
 ## Python integration
 

diff --git a/inst/CITATION b/inst/CITATION
@@ -4,11 +4,11 @@ citEntry(entry = "Manual",
          title        = "leiden: R implementation of the Leiden algorithm",
          author       = personList(as.person("S. Thomas Kelly")),
          year         = "2019",
-         note         = "R package version 0.3.1",
+         note         = "R package version 0.3.2",
          url          = "https://github.com/TomKellyGenetics/leiden",
 
          textVersion  =
-           paste("S. Thomas Kelly (2019). leiden: R implementation of the Leiden algorithm. R package version 0.3.1",
+           paste("S. Thomas Kelly (2019). leiden: R implementation of the Leiden algorithm. R package version 0.3.2",
                  "https://github.com/TomKellyGenetics/leiden")
 )
 

diff --git a/vignettes/benchmarking.Rmd b/vignettes/benchmarking.Rmd
@@ -14,17 +14,17 @@ library("leiden")
 library("reticulate")
 py_available()
 module <- py_available() && py_numpy_available() && py_module_available("leidenalg") && py_module_available("igraph")
-if(py_available() && !module){
-  reticulate::install_miniconda()
-  py_config()$python
-  reticulate::conda_create("r-reticulate")
-  reticulate::use_condaenv("r-reticulate")
-  conda_install("r-reticulate", "numpy")
-  conda_install("r-reticulate", "scipy")
-  reticulate::conda_install("r-reticulate", "python-igraph")
-  reticulate::py_install("r-reticulate", "leidenalg")
-  module <- py_module_available("leidenalg") && py_module_available("igraph")
-}
+# if(module){
+#   reticulate::install_miniconda()
+#   py_config()$python
+#   reticulate::conda_create("r-reticulate")
+#   reticulate::use_condaenv("r-reticulate")
+#   conda_install("r-reticulate", "numpy")
+#   conda_install("r-reticulate", "scipy")
+#   reticulate::conda_install("r-reticulate", "python-igraph")
+#   reticulate::py_install("r-reticulate", "leidenalg")
+#   module <- py_module_available("leidenalg") && py_module_available("igraph")
+# }
 if(module){
   leidenalg <- import("leidenalg", delay_load = TRUE)
   ig <- import("igraph", delay_load = TRUE)