CABIN DWI Workshop

Graduate Student Workshop on Diffusion Weighted MRI imaging and data processing

Arun Venkatarman, Zachary Christiensen, Alan Finkelstein

Organized By: Madalina Tivarus & Lars Ross

Resources

• DIPY : Data reconstruction (DTI, DKI, IVIM, Tractography) .
• FSL: Eddy correction (EDDY), Susceptibility correction (TOPUP), DTI, Tractography FSL Diffusion Practical
• MRtrix3 : Reconstruction (CSD) + FBA, Tractrography + SC.
• Brain Connecitivty Toolbox: Graph Theory analysis of SC (FC).
• Camino : Data Reconstruction + Synthesis + Tractography.

Publicly Available Data

1. Alzheimer's Disease Neuroimaging Initiative (ADNI)
2. Human Connectome Project (HCP)
3. OpenNeuro
4. Adolescent Brain Cognitive Development (ABCD) Study
5. Parkinson's Progression Markers Initiative (PPMI)

References

1. DTI Review - O'Donnell et al. 2012
2. NODDI -Zhang et al., 2012
3. Major White Matter Tracks - Bullock et al. 2022