fix logger name

TieuLongPhan · Apr 15, 2024 · 4f79296 · 4f79296
1 parent 147cd37
commit 4f79296
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Showing 4 changed files with 4 additions and 3 deletions.
diff --git a/synrbl/SynMCSImputer/SubStructure/extract_common_mcs.py b/synrbl/SynMCSImputer/SubStructure/extract_common_mcs.py
@@ -5,7 +5,7 @@
 from joblib import Parallel, delayed
 from typing import List, Dict, Tuple
 
-logger = logging.getLogger("SynRBL")
+logger = logging.getLogger("synrbl")
 
 
 class ExtractMCS:

diff --git a/synrbl/SynMCSImputer/SubStructure/mcs_process.py b/synrbl/SynMCSImputer/SubStructure/mcs_process.py
@@ -9,7 +9,7 @@
 
 from rdkit.rdBase import BlockLogs
 
-logger = logging.getLogger("SynRBL")
+logger = logging.getLogger("synrbl")
 
 
 def single_mcs(

diff --git a/synrbl/SynMCSImputer/model.py b/synrbl/SynMCSImputer/model.py
@@ -113,6 +113,7 @@ def run(self, reactions: list[dict], stats=None):
         block_logs = BlockLogs()
         for reaction in reactions:
             if self.mcs_data_col not in reaction.keys():
+                reaction[self.issue_col] = "No MCS identified."
                 continue
             mcs_applied += 1
             try:

diff --git a/synrbl/main.py b/synrbl/main.py
@@ -9,7 +9,7 @@
 from synrbl.SynMCSImputer.model import MCSBasedMethod
 from synrbl.confidence_prediction import ConfidencePredictor
 
-logger = logging.getLogger("SynRBL")
+logger = logging.getLogger("synrbl")
 
 
 class Balancer: