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/usr/local/bin/prokka-1.11
In order to run prokka you'll have to add the following two directories to your PATH variable:
/usr/local/bin/prokka-1.11/bin and /usr/local/bin/barrnap-0.6/bin
You can do this by manually editing your ~/.bashrc file, or run the following two commands:
echo "export PATH=$PATH:/usr/local/bin/prokka-1.11/bin:/usr/local/bin/barrnap-0.6/bin" >> ~/.bashrc source ~/.bashrc