Fix param naming in check_max function

TRON-Bioinformatics · Jul 26, 2023 · 8ab5c4e · 8ab5c4e
1 parent 96082bb
commit 8ab5c4e
Showing 1 changed file with 8 additions and 8 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -108,29 +108,29 @@ params.manifest = manifest
 def check_max(obj, type) {
     if (type == 'memory') {
         try {
-            if (obj.compareTo(params.max_memory as nextflow.util.MemoryUnit) == 1)
-                return params.max_memory as nextflow.util.MemoryUnit
+            if (obj.compareTo(params.memory as nextflow.util.MemoryUnit) == 1)
+                return params.memory as nextflow.util.MemoryUnit
             else
                 return obj
         } catch (all) {
-            println "   ### ERROR ###   Max memory '${params.max_memory}' is not valid! Using default value: $obj"
+            println "   ### ERROR ###   Max memory '${params.memory}' is not valid! Using default value: $obj"
             return obj
         }
     } else if (type == 'time') {
         try {
-            if (obj.compareTo(params.max_time as nextflow.util.Duration) == 1)
-                return params.max_time as nextflow.util.Duration
+            if (obj.compareTo(params.time as nextflow.util.Duration) == 1)
+                return params.time as nextflow.util.Duration
             else
                 return obj
         } catch (all) {
-            println "   ### ERROR ###   Max time '${params.max_time}' is not valid! Using default value: $obj"
+            println "   ### ERROR ###   Max time '${params.time}' is not valid! Using default value: $obj"
             return obj
         }
     } else if (type == 'cpus') {
         try {
-            return Math.min( obj, params.max_cpus as int )
+            return Math.min( obj, params.cpus as int )
         } catch (all) {
-            println "   ### ERROR ###   Max cpus '${params.max_cpus}' is not valid! Using default value: $obj"
+            println "   ### ERROR ###   Max cpus '${params.cpus}' is not valid! Using default value: $obj"
             return obj
         }
     }