diff --git a/nextflow.config b/nextflow.config index e0a4653..57e1f41 100644 --- a/nextflow.config +++ b/nextflow.config @@ -152,10 +152,14 @@ def check_max(obj, type) { params.help_message = """ TronFlow Copy Number Calling v${params.manifest.version} +Author: ${params.manifest.author} +DOI: ${params.manifest.doi} +GitHub: ${params.manifest.homePage} + ${params.manifest.description} Usage: - nextflow run main.nf -profile conda --input_files input_files.tsv --reference reference.fasta --intervals target_region.bed --tools cnvkit,sequenza + nextflow run ${params.manifest.mainScript} -profile conda --input_files input_files.tsv --reference reference.fasta --intervals target_region.bed --tools cnvkit,sequenza Input: * input_files: the path to a tab-separated values file containing in each row the sample name, tumor bam and normal bam