diff --git a/modules/03_metrics.nf b/modules/03_metrics.nf index 839f047..fe8ff12 100644 --- a/modules/03_metrics.nf +++ b/modules/03_metrics.nf @@ -52,7 +52,8 @@ process METRICS { tag "${name}" publishDir "${params.output}/${name}/metrics/gatk_multiple_metrics", mode: "copy" - conda (params.enable_conda ? "bioconda::gatk4=4.2.0.0" : null) + // NOTE: the method CollectMultipleMetrics has a hidden dependency to R for making plots + conda (params.enable_conda ? "bioconda::gatk4=4.2.0.0 r::r=3.6.0" : null) input: tuple val(name), val(type), file(bam), file(bai)