diff --git a/modules/02_star.nf b/modules/02_star.nf index f06d9b1..2f74fd0 100644 --- a/modules/02_star.nf +++ b/modules/02_star.nf @@ -28,7 +28,6 @@ process STAR { --outReadsUnmapped Fastx \ --outFilterMismatchNoverLmax 0.02 \ --runThreadN ${task.cpus} \ - --outSAMtype BAM SortedByCoordinate \ --outFileNamePrefix ${name}. mv ${name}.Aligned.sortedByCoord.out.bam ${name}.bam @@ -67,7 +66,6 @@ process STAR_SE { --outReadsUnmapped Fastx \ --outFilterMismatchNoverLmax 0.02 \ --runThreadN ${task.cpus} \ - --outSAMtype BAM SortedByCoordinate \ --outFileNamePrefix ${name}. mv ${name}.Aligned.sortedByCoord.out.bam ${name}.bam