NatureProtocols_step6.txt

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## Parameters for step 6 of the CUBIC Analysis ##
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#
#
# Note: to avoid any problem, please do not
#        change the file structure, only the 
#        parameter values
#
#
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# Folders #
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#
# Folder containing the NIfTI files
/Users/perrin2/Desktop/CUBIC/nii_merged/
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# Folder containing the registration files
/Users/perrin2/Desktop/CUBIC/registration/
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# Folder containing the analysis results
/Users/perrin2/Desktop/CUBIC/analysis/
#
#
#
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# Brains #
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#
# List of brain IDs
001,002,003
#
# Internal reference brain
003
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# Brain atlas (including full path)
/Users/perrin2/Dropbox/Code_for_macubic_computer/atlas/atlas_rescaled.nii
#
#
#
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# Registration #
################
#
# Registration method used in steps 4 and 5 ("affine" or "SyN")
affine
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#
#
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# Log file #
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#
# Name of the log file (including full path)
/Users/perrin2/Desktop/CUBIC/logs/log_NatureProtocols_step6.txt
#
#
#
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## END ##
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