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SysBioChalmers/Kluyveromyces_marxianus-GEM

biomass calculation

Hi,In the reported paper Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model , r_1912 is the biomass production reaction in which the protein coefficient is the percentage ...

• Zephyr-112
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• 1
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• Opened 
  on Apr 1, 2024
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• #9

SysBioChalmers/Kluyveromyces_marxianus-GEM

Help: For intergrating the TSS seq of 30D, 30DS, and 45D into the K. marxianus model

As described in the paper, The TSS-seq data was used to turn off the gene-associated reactions without transcriptional evidence while leaving the constraints for other reactions intact. ... This was done ...

• wenjuanmo
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• 2
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• Opened 
  on Feb 18, 2020
·
• #7

SysBioChalmers/Kluyveromyces_marxianus-GEM

Help: How about the input values of carbon source and oxygen for the in silico growth?

In the reported paper Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model , the Kluyveromyces marxianus model was calculated. However, only biomass is known as the objective, ...

• wenjuanmo
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• 4
·
• Opened 
  on Feb 7, 2020
·
• #6

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