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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-5c13a162
+5d4ba1a9
diff --git a/index.html b/index.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.57">
+<meta name="generator" content="quarto-1.6.39">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -37,10 +37,10 @@
 <script src="site_libs/quarto-html/tippy.umd.min.js"></script>
 <script src="site_libs/quarto-html/anchor.min.js"></script>
 <link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
-<link href="site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
+<link href="site_libs/quarto-html/quarto-syntax-highlighting-0626ff4d7a71b55c8707dcae1d04a9b6.css" rel="stylesheet" id="quarto-text-highlighting-styles">
 <script src="site_libs/bootstrap/bootstrap.min.js"></script>
 <link href="site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
-<link href="site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
+<link href="site_libs/bootstrap/bootstrap-5df07c865ac155ed07c8cb504c12fe16.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
 <script id="quarto-search-options" type="application/json">{
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@@ -234,12 +234,12 @@ <h1 class="title">NCI Gadi Guide for USyd researchers</h1>
 </header>
 
 
-<p>This document contains instructions for how to access and utilise NCI’s HPC, Gadi for University of Sydney researchers. Please be mindful this is not an exhausive resource for using the NCI Gadi HPC. It is only intended to orientate you to the system and navigate the Gadi user documentation.</p>
+<p>This document contains instructions for how to access and utilise NCI’s HPC, Gadi for University of Sydney researchers. Please be mindful this is not an exhaustive resource for using the NCI Gadi HPC. It is only intended to orientate you to the system and navigate the Gadi user documentation.</p>
 <p>NCI’s HPC systems are designed to handle complex computational tasks, such as simulations, data analysis, and modeling, for a wide range of scientific disciplines, including climate modeling, genomics, astronomy, and materials science.</p>
-<p>The University of Sydney provides its researchers with subsidised access to NCI’s infrastructure. To arrange user credits (service units) for your account, please contact SIH’s Research Computing team through our <a href="https://www.sydney.edu.au/research/facilities/sydney-informatics-hub/schemes.html">website</a>.</p>
+<p>The University of Sydney provides its researchers with subsidised access to NCI’s infrastructure. After creating an NCI account and project, visit <a href="https://nci.sydney.edu.au/">https://nci.sydney.edu.au/</a> to request Service Units for your project (note: you must be on the University of Sydney Network/VPN).</p>
 <section id="support" class="level2">
 <h2 class="anchored" data-anchor-id="support">Support</h2>
-<p>SIH is limited in the support it can provide for NCI Gadi users. If you are new to HPC and Gadi, we expect you will attend <a href="https://sydney-informatics-hub.github.io/training.artemis/">SIH’s Intro to HPC</a> and NCI’s Intro to Gadi courses. Additionally, familiarise yourself with Gadi using the <a href="https://opus.nci.org.au/display/Help/Gadi+User+Guide">NCI Gadi user guide</a>:</p>
+<p>SIH is limited in the support it can provide for NCI Gadi users. If you are new to HPC and Gadi, we expect you will attend <a href="https://sydney-informatics-hub.github.io/training.artemis/">SIH’s Intro to HPC</a> and <a href="https://opus.nci.org.au/spaces/Help/pages/48497461/NCI+Training+and+Educational+Events">NCI’s Intro to Gadi</a> courses. Additionally, familiarise yourself with Gadi using the <a href="https://opus.nci.org.au/display/Help/Gadi+User+Guide">NCI Gadi user guide</a>:</p>
 <ul>
 <li><a href="https://www.sydney.edu.au/research/facilities/sydney-informatics-hub/workshops-and-training/training-calendar.html">SIH training calendar</a></li>
 <li><a href="https://opus.nci.org.au/display/Help/NCI+Training+and+Educational+Events">NCI training calendar</a></li>
@@ -258,19 +258,19 @@ <h2 class="anchored" data-anchor-id="support">Support</h2>
 <tr class="odd">
 <td style="text-align: left;">Service unit allocation for running jobs</td>
 <td style="text-align: left;">SIH</td>
-<td style="text-align: left;"><a href="https://www.sydney.edu.au/research/facilities/sydney-informatics-hub.html">Log a ticket</a></td>
+<td style="text-align: left;"><a href="https://nci.sydney.edu.au/">Make a request</a></td>
 <td style="text-align: left;"><a href="https://www.sydney.edu.au/research/facilities/sydney-informatics-hub/schemes.html">SIH schemes</a></td>
 </tr>
 <tr class="even">
 <td style="text-align: left;">An issue with NCI Gadi</td>
 <td style="text-align: left;">NCI Helpdesk</td>
-<td style="text-align: left;"><a href="https://nci.org.au/users/nci-helpdesk">Log a ticket</a></td>
+<td style="text-align: left;"><a href="https://nci.org.au/users/nci-helpdesk">Log an NCI ticket</a></td>
 <td style="text-align: left;">Provide your error, log file, jobid</td>
 </tr>
 <tr class="odd">
 <td style="text-align: left;">Any error returned in running a job</td>
 <td style="text-align: left;">NCI Helpdesk</td>
-<td style="text-align: left;"><a href="https://nci.org.au/users/nci-helpdesk">Log a ticket</a></td>
+<td style="text-align: left;"><a href="https://nci.org.au/users/nci-helpdesk">Log an NCI ticket</a></td>
 <td style="text-align: left;">Provide your error, log file, jobid</td>
 </tr>
 <tr class="even">
@@ -282,7 +282,7 @@ <h2 class="anchored" data-anchor-id="support">Support</h2>
 <tr class="odd">
 <td style="text-align: left;">Bioinformatics advice</td>
 <td style="text-align: left;">SIH</td>
-<td style="text-align: left;"><a href="https://www.sydney.edu.au/research/facilities/sydney-informatics-hub.html">Log a ticket</a></td>
+<td style="text-align: left;"><a href="https://www.sydney.edu.au/research/facilities/sydney-informatics-hub.html">Log an SIH ticket</a></td>
 <td style="text-align: left;">Provide relevant context, errors, tool names, scripts</td>
 </tr>
 </tbody>
@@ -374,8 +374,6 @@ <h2 class="anchored" data-anchor-id="support">Support</h2>
   });
   clipboard.on('success', onCopySuccess);
   if (window.document.getElementById('quarto-embedded-source-code-modal')) {
-    // For code content inside modals, clipBoardJS needs to be initialized with a container option
-    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
     const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
       text: getTextToCopy,
       container: window.document.getElementById('quarto-embedded-source-code-modal')
@@ -486,7 +484,6 @@ <h2 class="anchored" data-anchor-id="support">Support</h2>
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       } else {

diff --git a/lesson.css b/lesson.css
@@ -618,13 +618,15 @@ div.error {
 }
  .footertext {
 	 text-align: center;
+	 font-size: 14px;
 }
  footer .license, footer .help-links {
-	 font-size: inherit;
+	 font-size: 16px;
 	 margin-top: 10px;
 	 margin-bottom: 10px;
 	 font-weight: 500;
 	 line-height: 1.1;
+	 text-align: left;
 }
  img.navbar-logo {
 	 height: 40px;

diff --git a/notebooks/00_gadi_access.html b/notebooks/00_gadi_access.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.57">
+<meta name="generator" content="quarto-1.6.39">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -37,10 +37,10 @@
 <script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
 <script src="../site_libs/quarto-html/anchor.min.js"></script>
 <link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
-<link href="../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
+<link href="../site_libs/quarto-html/quarto-syntax-highlighting-0626ff4d7a71b55c8707dcae1d04a9b6.css" rel="stylesheet" id="quarto-text-highlighting-styles">
 <script src="../site_libs/bootstrap/bootstrap.min.js"></script>
 <link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
-<link href="../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
+<link href="../site_libs/bootstrap/bootstrap-5df07c865ac155ed07c8cb504c12fe16.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
 <script id="quarto-search-options" type="application/json">{
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@@ -368,8 +368,6 @@ <h2 class="anchored" data-anchor-id="manage-your-nci-account"><strong>Manage you
   });
   clipboard.on('success', onCopySuccess);
   if (window.document.getElementById('quarto-embedded-source-code-modal')) {
-    // For code content inside modals, clipBoardJS needs to be initialized with a container option
-    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
     const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
       text: getTextToCopy,
       container: window.document.getElementById('quarto-embedded-source-code-modal')
@@ -480,7 +478,6 @@ <h2 class="anchored" data-anchor-id="manage-your-nci-account"><strong>Manage you
       if (window.Quarto?.typesetMath) {
         window.Quarto.typesetMath(note);
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-      // TODO in 1.5, we should make sure this works without a callout special case
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       } else {

diff --git a/notebooks/01_setup.html b/notebooks/01_setup.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.57">
+<meta name="generator" content="quarto-1.6.39">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -71,10 +71,10 @@
 <script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
 <script src="../site_libs/quarto-html/anchor.min.js"></script>
 <link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
-<link href="../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
+<link href="../site_libs/quarto-html/quarto-syntax-highlighting-0626ff4d7a71b55c8707dcae1d04a9b6.css" rel="stylesheet" id="quarto-text-highlighting-styles">
 <script src="../site_libs/bootstrap/bootstrap.min.js"></script>
 <link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
-<link href="../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
+<link href="../site_libs/bootstrap/bootstrap-5df07c865ac155ed07c8cb504c12fe16.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
 <script id="quarto-search-options" type="application/json">{
   "location": "navbar",
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@@ -492,8 +492,6 @@ <h3 class="anchored" data-anchor-id="windows"><strong><em>Windows</em></strong><
   });
   clipboard.on('success', onCopySuccess);
   if (window.document.getElementById('quarto-embedded-source-code-modal')) {
-    // For code content inside modals, clipBoardJS needs to be initialized with a container option
-    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
     const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
       text: getTextToCopy,
       container: window.document.getElementById('quarto-embedded-source-code-modal')
@@ -604,7 +602,6 @@ <h3 class="anchored" data-anchor-id="windows"><strong><em>Windows</em></strong><
       if (window.Quarto?.typesetMath) {
         window.Quarto.typesetMath(note);
       }
-      // TODO in 1.5, we should make sure this works without a callout special case
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         return note.outerHTML;
       } else {

diff --git a/notebooks/02_system_setup.html b/notebooks/02_system_setup.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.57">
+<meta name="generator" content="quarto-1.6.39">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -71,10 +71,10 @@
 <script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
 <script src="../site_libs/quarto-html/anchor.min.js"></script>
 <link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
-<link href="../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
+<link href="../site_libs/quarto-html/quarto-syntax-highlighting-0626ff4d7a71b55c8707dcae1d04a9b6.css" rel="stylesheet" id="quarto-text-highlighting-styles">
 <script src="../site_libs/bootstrap/bootstrap.min.js"></script>
 <link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
-<link href="../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
+<link href="../site_libs/bootstrap/bootstrap-5df07c865ac155ed07c8cb504c12fe16.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
 <script id="quarto-search-options" type="application/json">{
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@@ -367,7 +367,7 @@ <h4 class="anchored" data-anchor-id="compute-nodes">Compute nodes</h4>
 </div>
 </div>
 <div class="callout-body-container callout-body">
-<p>Compute nodes on Gadi don’t currently have access to external internet. If any tasks within a submitted job on the compute node need to access the internet, they will fail. These jobs should be run separtately on the <code>copyq</code> using the data mover nodes.</p>
+<p>Compute nodes on Gadi don’t currently have access to external internet. If any tasks within a submitted job on the compute node need to access the internet, they will fail. These jobs should be run separtately on the <code>copyq</code> using the data mover nodes. Or else use an ARE job.</p>
 </div>
 </div>
 </section>
@@ -511,8 +511,6 @@ <h3 class="anchored" data-anchor-id="queues"><strong><em>Queues</em></strong></h
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   clipboard.on('success', onCopySuccess);
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-    // For code content inside modals, clipBoardJS needs to be initialized with a container option
-    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
     const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
       text: getTextToCopy,
       container: window.document.getElementById('quarto-embedded-source-code-modal')
@@ -623,7 +621,6 @@ <h3 class="anchored" data-anchor-id="queues"><strong><em>Queues</em></strong></h
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diff --git a/notebooks/03_expectations.html b/notebooks/03_expectations.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.57">
+<meta name="generator" content="quarto-1.6.39">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -71,10 +71,10 @@
 <script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
 <script src="../site_libs/quarto-html/anchor.min.js"></script>
 <link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
-<link href="../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
+<link href="../site_libs/quarto-html/quarto-syntax-highlighting-0626ff4d7a71b55c8707dcae1d04a9b6.css" rel="stylesheet" id="quarto-text-highlighting-styles">
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 <link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
-<link href="../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
+<link href="../site_libs/bootstrap/bootstrap-5df07c865ac155ed07c8cb504c12fe16.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
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@@ -431,8 +431,6 @@ <h3 class="anchored" data-anchor-id="keep-track-of-your-resource-usage"><strong>
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-    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
     const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
       text: getTextToCopy,
       container: window.document.getElementById('quarto-embedded-source-code-modal')
@@ -543,7 +541,6 @@ <h3 class="anchored" data-anchor-id="keep-track-of-your-resource-usage"><strong>
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diff --git a/notebooks/04_nagivating_system.html b/notebooks/04_nagivating_system.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.57">
+<meta name="generator" content="quarto-1.6.39">
 
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@@ -37,10 +37,10 @@
 <script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
 <script src="../site_libs/quarto-html/anchor.min.js"></script>
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-<link href="../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
+<link href="../site_libs/quarto-html/quarto-syntax-highlighting-0626ff4d7a71b55c8707dcae1d04a9b6.css" rel="stylesheet" id="quarto-text-highlighting-styles">
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 <link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
-<link href="../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
+<link href="../site_libs/bootstrap/bootstrap-5df07c865ac155ed07c8cb504c12fe16.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
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-    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
     const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
       text: getTextToCopy,
       container: window.document.getElementById('quarto-embedded-source-code-modal')
@@ -498,7 +496,6 @@ <h2 class="anchored" data-anchor-id="apps"><code>/apps</code></h2>
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