The following code is contained in this repository:
- scripts for alternative excision of IESs (Alternative_excision)
- scripts for IES retention score correlation analyses (IES_retention)
- scripts for sRNA mapping, post-processing and sRNA histograms (sRNA_analysis)
- scripts for analysis of knockdown efficiency assessed by RNA-seq (KD-efficiency)
- scripts for nucleosome density analyses (Nucleosome_density)
- scripts for postprocessing of immunofluorescence images (Postprocessing_IF)