Code for ICOP manuscript

The following code is contained in this repository:

1. scripts for alternative excision of IESs (Alternative_excision)
2. scripts for IES retention score correlation analyses (IES_retention)
3. scripts for sRNA mapping, post-processing and sRNA histograms (sRNA_analysis)
4. scripts for analysis of knockdown efficiency assessed by RNA-seq (KD-efficiency)
5. scripts for nucleosome density analyses (Nucleosome_density)
6. scripts for postprocessing of immunofluorescence images (Postprocessing_IF)