testing-pipline.yml

name: Integration-test

on:
  push:
    branches:
      - main
    paths:
      - "CodeListLibrary_project/**"
  pull_request:
    paths:
      - "CodeListLibrary_project/**"

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: ${{ github.event_name == 'pull_request' }}

jobs:
  pre-deploy-test:
    env:
      working-directory: ./concept-library
    runs-on:
      labels: [self-hosted, linux, x64]
      group: heavy
    strategy:
      max-parallel: 4
      matrix:
        python-version: [3.11]

    services:
      db:
        image: postgres
        env:
          POSTGRES_DB: concept_library
          POSTGRES_USER: clluser_test
          POSTGRES_PASSWORD: password
        ports:
          - 5432:5432
        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5

    steps:
      - uses: actions/checkout@v3
      - run: |
          sudo apt-get update
          sudo apt-get install -y libgconf-2-4 libatk1.0-0 libatk-bridge2.0-0 libgdk-pixbuf2.0-0 libgtk-3-0 libgbm-dev libnss3-dev libxss-dev libasound2 
          wget -q -O - https://dl.google.com/linux/linux_signing_key.pub | sudo apt-key add -
      - uses: browser-actions/setup-chrome@v1
      - uses: actions/cache@v3
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-pip-${{ hashFiles('docker/requirements/test-requirements.txt') }}
          restore-keys: |
            ${{ runner.os }}-pip-

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v3
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install LDAP files
        run: |
          sudo apt-get install -y -q libsasl2-dev libldap2-dev libssl-dev libpq-dev

      - name: Install Dependencies
        run: |
          python -m pip install --upgrade pip
          pip install --upgrade --upgrade-strategy eager -r docker/requirements/test-requirements.txt

      - name: Prepare Selenium
        uses: nanasess/setup-chromedriver@v2
      - name: Run Browser
        run: |
          chrome --version
      - name: Run chromedriver
        run: |
          export DISPLAY=:99
          chromedriver --url-base=/wd/hub &
          sudo Xvfb -ac :99 -screen 0 1280x1024x24 > /dev/null 2>&1 & # optional

      - name: Run application
        run: |
          export $(grep -v '^#' docker/selenium-testing/env/remotetest.compose.env | xargs)
          cd CodeListLibrary_project
          python manage.py makemigrations
          python manage.py migrate
          python manage.py runserver 0.0.0.0:8000 > /dev/null &

      - name: Run tests
        run: |
          export $(grep -v '^#' docker/selenium-testing/env/remotetest.compose.env | xargs)
          cd CodeListLibrary_project
          pytest -v -s --cov-report xml --cov . --html=report.html --self-contained-html --alluredir=./clinicalcode/tests/allure-results
        env:
          DISPLAY: ":99"

      - name: Coverage report
        if: always()
        uses: 5monkeys/cobertura-action@v13
        with:
          path: CodeListLibrary_project/coverage.xml
          minimum_coverage: 25

      - name: Upload Test Results
        if: always()
        uses: actions/upload-artifact@v3
        with:
          name: test-results
          path: CodeListLibrary_project/report.html
          retention-days: 5

      - name: Get Allure history
        uses: actions/checkout@v3
        if: (success() || failure()) && github.event_name != 'pull_request'
        continue-on-error: true
        with:
          ref: gh-pages
          path: gh-pages

      - name: Allure report action # Step to generate Allure report
        if: (success() || failure()) && github.event_name != 'pull_request'
        uses: simple-elf/allure-report-action@master
        with:
          allure_results: CodeListLibrary_project/clinicalcode/tests/allure-results
          allure_report: CodeListLibrary_project/clinicalcode/tests/allure-report
          allure_history: allure-history
          gh_pages: gh-pages
          keep_reports: 10 # Specify the number of previous reports to keep

      - name: Upload an artifact for GitHub Pages
        uses: actions/upload-pages-artifact@v2
        if: (success() || failure()) && github.event_name != 'pull_request'
        with:
          name: allure-report
          path: CodeListLibrary_project/clinicalcode/tests/allure-report

      - name: Deploy report to gh-pages branch
        if: (success() || failure()) && github.event_name != 'pull_request'
        uses: peaceiris/actions-gh-pages@v2
        env:
          PERSONAL_TOKEN: ${{ secrets.GITHUB_TOKEN }}
          PUBLISH_BRANCH: gh-pages
          PUBLISH_DIR: allure-history
          keep_files: true