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Folders and files

Name		Name	Last commit message	Last commit date
parent directory ..
.gitignore		.gitignore
EMTAB3929_preimplantation_embryos_to_scanpy.py		EMTAB3929_preimplantation_embryos_to_scanpy.py
GSE52529_myoblasts_Trapnell_to_scanpy.py		GSE52529_myoblasts_Trapnell_to_scanpy.py
GSE57872_GBM_PatelBernstein_to_scanpy.py		GSE57872_GBM_PatelBernstein_to_scanpy.py
GSE63818_primordial_germ_cells_Guo_to_scanpy.py		GSE63818_primordial_germ_cells_Guo_to_scanpy.py
GSE64016_H1andFUCCI_Leng_to_scanpy.py		GSE64016_H1andFUCCI_Leng_to_scanpy.py
GSE79102_myeloproloferative_disease_Kiselev_to_scanpy.py		GSE79102_myeloproloferative_disease_Kiselev_to_scanpy.py
GSE79331_hematopoietic_to_scanpy.py		GSE79331_hematopoietic_to_scanpy.py
GSE81076_pancreas_Grun_to_scanpy.py		GSE81076_pancreas_Grun_to_scanpy.py
GSE84465_GBM_DarmanisQuake_to_scanpy.py		GSE84465_GBM_DarmanisQuake_to_scanpy.py
SRP073808_embryonicStemCells_Koh_to_scanpy.py		SRP073808_embryonicStemCells_Koh_to_scanpy.py
annotated_heatmap.py		annotated_heatmap.py
call_exportClusterExpressionMatrix.sh		call_exportClusterExpressionMatrix.sh
call_exportClusterRankings.sh		call_exportClusterRankings.sh
call_exportSampleExpressionMatrix.sh		call_exportSampleExpressionMatrix.sh
call_exportSampleUMAPCoords.sh		call_exportSampleUMAPCoords.sh
call_exportSampleUMAPCoords_loopdir.sh		call_exportSampleUMAPCoords_loopdir.sh
call_exportSampletSNECoords.sh		call_exportSampletSNECoords.sh
call_exportSampletSNECoords_loopdir.sh		call_exportSampletSNECoords_loopdir.sh
call_scanpyToCluster.sh		call_scanpyToCluster.sh
call_scanpyToCluster_countData.sh		call_scanpyToCluster_countData.sh
countCells.py		countCells.py
countCells.sh		countCells.sh
exportClusterExpressionMatrix.py		exportClusterExpressionMatrix.py
exportClusterRankings.py		exportClusterRankings.py
exportSampleExpressionMatrix.py		exportSampleExpressionMatrix.py
exportSampleUMAPCoords.py		exportSampleUMAPCoords.py
exportSampletSNECoords.py		exportSampletSNECoords.py
hematopoietic_exploration.py		hematopoietic_exploration.py
immune_exploration.py		immune_exploration.py
immune_metadata_to_scanpy.py		immune_metadata_to_scanpy.py
kreigstein_exploration.py		kreigstein_exploration.py
kriegstein_RadialGliaStudy1_to_scanpy.py		kriegstein_RadialGliaStudy1_to_scanpy.py
mouse_to_human_ortho.py		mouse_to_human_ortho.py
quake_exploration.py		quake_exploration.py
scanpyLibrary.py		scanpyLibrary.py
scanpyToCluster.py		scanpyToCluster.py
scanpy_clustered_to_traj_exp.py		scanpy_clustered_to_traj_exp.py
tabula_muris_to_scanpy.py		tabula_muris_to_scanpy.py
tabula_muris_to_scanpy_tissue.py		tabula_muris_to_scanpy_tissue.py
test.sh		test.sh
trajectory_dendogram.py		trajectory_dendogram.py
trajectory_metadata.py		trajectory_metadata.py
trajectory_similarity.py		trajectory_similarity.py
ucsc_human_cortex_to_scanpy.py		ucsc_human_cortex_to_scanpy.py
yanni.py		yanni.py
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