rust.yml

name: Rust CI

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

env:
  CARGO_TERM_COLOR: always
  RUSTFLAGS: -D warnings

jobs:
  test:
    runs-on: ubuntu-latest

    strategy:
      matrix:
        toolchain: [ stable, beta, nightly ]

    steps:
      - uses: actions/checkout@v4

      - name: Install HDF5
        run: sudo apt-get update && sudo apt-get install -y libhdf5-dev

      - name: Set up Rust
        run: rustup update ${{ matrix.toolchain }} && rustup default ${{ matrix.toolchain }}

      - name: Run tests
        run: cargo test --verbose

  benchmark:
    runs-on: ubuntu-latest

    strategy:
      matrix:
        toolchain: [ stable, beta, nightly ]

    steps:
      - uses: actions/checkout@v4

      - name: Install HDF5
        run: sudo apt-get update && sudo apt-get install -y libhdf5-dev

      - name: Set up Rust
        run: rustup update ${{ matrix.toolchain }} && rustup default ${{ matrix.toolchain }}

      - name: Run benchmarks
        run: cargo bench --profile release --verbose

      - name: Upload benchmark reports
        if: always()
        uses: actions/upload-artifact@v4
        with:
          name: criterion-report-${{ matrix.toolchain }}
          path: target/criterion/

  clippy:
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v4

      - name: Install HDF5
        run: sudo apt-get update && sudo apt-get install -y libhdf5-dev

      - name: Set up Rust
        run: rustup update stable && rustup default stable

      - name: Run clippy
        run: cargo clippy --all-targets --all-features -- -D warnings

  fmt:
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v4

      - name: Set up Rust
        run: rustup update nightly && rustup default nightly

      - name: Install Rustfmt
        run: rustup component add rustfmt --toolchain nightly

      - name: Run fmt
        run: cargo fmt --all -- --check

  doc:
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v4

      - name: Install HDF5
        run: sudo apt-get update && sudo apt-get install -y libhdf5-dev

      - name: Set up Rust
        run: rustup update stable && rustup default stable

      - name: Run doc
        run: cargo doc -p metabodecon --document-private-items --no-deps

      - name: Upload doc
        uses: actions/upload-artifact@v4
        with:
          name: doc
          path: target/doc/