From 18a4a777020d56a3a08d92b74ad181180aaaff5a Mon Sep 17 00:00:00 2001
From: Claus Stadler <RavenArkadon@googlemail.com>
Date: Thu, 22 Jun 2023 14:16:53 +0200
Subject: [PATCH] Trying to get rid of logging conflicts due to reload4j and
 hadoop dependencies

---
 pom.xml                            | 185 ++++++++++++++++++++---------
 rdf-processing-toolkit-cli/pom.xml |  85 +++++++++++--
 2 files changed, 207 insertions(+), 63 deletions(-)

diff --git a/pom.xml b/pom.xml
index 6770d80..b73b3e2 100644
--- a/pom.xml
+++ b/pom.xml
@@ -73,6 +73,79 @@
 	</properties>
 	<dependencyManagement>
 		<dependencies>
+			<dependency>
+				<!--				<groupId>org.apache.hadoop</groupId>-->
+				<!--				<artifactId>hadoop-client</artifactId>-->
+				<!--				<version>${hadoop.version}</version>-->
+				<!--			</dependency>-->
+				<!--			<dependency>-->
+				<!--				<groupId>org.apache.hadoop</groupId>-->
+				<!--				<artifactId>hadoop-client-api</artifactId>-->
+				<!--				<version>${hadoop.version}</version>-->
+				<groupId>org.apache.hadoop</groupId>
+				<artifactId>hadoop-common</artifactId>
+				<version>${hadoop.version}</version>
+				<!-- <exclusions> <exclusion> <groupId>*</groupId> <artifactId>*</artifactId> 
+                                        </exclusion> </exclusions> -->
+				<!-- Exclude web stuff (jetty, jersey)from hadoop -->
+				<exclusions>
+					<exclusion>
+						<groupId>org.eclipse.jetty</groupId>
+						<artifactId>jetty-server</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>org.eclipse.jetty</groupId>
+						<artifactId>jetty-util</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>org.eclipse.jetty</groupId>
+						<artifactId>jetty-servlet</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>org.eclipse.jetty</groupId>
+						<artifactId>jetty-webapp</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>javax.servlet.jsp</groupId>
+						<artifactId>jsp-api</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>com.sun.jersey</groupId>
+						<artifactId>jersey-core</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>com.sun.jersey</groupId>
+						<artifactId>jersey-servlet</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>com.sun.jersey</groupId>
+						<artifactId>jersey-json</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>com.sun.jersey</groupId>
+						<artifactId>jersey-server</artifactId>
+					</exclusion>
+					<!-- <exclusion> <groupId>ch.qos.reload4j</groupId> <artifactId>reload4j</artifactId> 
+                                                </exclusion> -->
+					<exclusion>
+						<groupId>org.slf4j</groupId>
+						<artifactId>slf4j-reload4j</artifactId>
+					</exclusion>
+					<!-- <exclusion> <groupId>log4j</groupId> <artifactId>log4j</artifactId> 
+                                                </exclusion> -->
+					<exclusion>
+						<groupId>org.slf4j</groupId>
+						<artifactId>slf4j-log4j12</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>commons-logging</groupId>
+						<artifactId>commons-logging</artifactId>
+					</exclusion>
+					<!-- <exclusion> <groupId>org.codehaus.woodstox</groupId> <artifactId>stax2-api</artifactId> 
+                                                </exclusion> <exclusion> <groupId>com.fasterxml.woodstox</groupId> <artifactId>woodstox-core</artifactId> 
+                                                </exclusion> -->
+				</exclusions>
+			</dependency>
 			<dependency>
 				<groupId>org.aksw.conjure</groupId>
 				<artifactId>conjure-datasources</artifactId>
@@ -306,79 +379,79 @@
 			</dependency>
 			<!-- explicit jetty dependencies to pin version conflict with hadoop-client -->
 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-client</artifactId>
-			  <version>${jetty.version}</version>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-client</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-util</artifactId>
-			  <version>${jetty.version}</version>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-util</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-io</artifactId>
-			  <version>${jetty.version}</version>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-io</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-http</artifactId>
-			  <version>${jetty.version}</version>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-http</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-servlets</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-servlets</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-servlet</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-servlet</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-server</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-server</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-webapp</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-webapp</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-xml</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-xml</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-security</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-security</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-util-ajax</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-util-ajax</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-annotations</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-annotations</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-plus</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-plus</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>jetty-jndi</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>jetty-jndi</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
- 			<dependency>
-			  <groupId>org.eclipse.jetty</groupId>
-			  <artifactId>apache-jsp</artifactId>
-			  <version>${jetty.version}</version>
+			<dependency>
+				<groupId>org.eclipse.jetty</groupId>
+				<artifactId>apache-jsp</artifactId>
+				<version>${jetty.version}</version>
 			</dependency>
 			<dependency>
 				<groupId>junit</groupId>
diff --git a/rdf-processing-toolkit-cli/pom.xml b/rdf-processing-toolkit-cli/pom.xml
index 19be9c9..ad8e557 100644
--- a/rdf-processing-toolkit-cli/pom.xml
+++ b/rdf-processing-toolkit-cli/pom.xml
@@ -28,15 +28,17 @@
 				</exclusion>
 			</exclusions>
 		</dependency>
+<!--		<dependency>-->
+<!--		  <groupId>org.apache.hadoop</groupId>-->
+<!--		  <artifactId>hadoop-client</artifactId>-->
+<!--		</dependency>-->
+<!--		<dependency>-->
+<!--		  <groupId>org.apache.hadoop</groupId>-->
+<!--		  <artifactId>hadoop-client-api</artifactId>-->
+<!--		</dependency>-->
 		<dependency>
 		  <groupId>org.apache.hadoop</groupId>
-		  <artifactId>hadoop-client</artifactId>
-		  <version>${hadoop.version}</version>
-		</dependency>
-		<dependency>
-		  <groupId>org.apache.hadoop</groupId>
-		  <artifactId>hadoop-client-api</artifactId>
-		  <version>${hadoop.version}</version>
+		  <artifactId>hadoop-common</artifactId>
 		</dependency>
 		<dependency>
 			<groupId>org.aksw.conjure</groupId>
@@ -133,6 +135,75 @@
 			<scope>test</scope>
 		</dependency>
 	</dependencies>
+	
+	<!-- net.sansa_stack.spark.cli.cmd.VersionProviderFromClasspathProperties.getVersion(VersionProviderFromClasspathProperties.java:32) -->
+	<build><plugins>
+	    <plugin>
+      <groupId>org.codehaus.mojo</groupId>
+      <artifactId>exec-maven-plugin</artifactId>
+      <version>3.0.0</version>
+      <executions>
+        <execution>
+          <id>generateManPages</id>
+          <phase>process-classes</phase>
+          <goals>
+            <goal>java</goal>
+          </goals>
+        </execution>
+      </executions>
+      <configuration>
+        <includeProjectDependencies>true</includeProjectDependencies>
+        <includePluginDependencies>true</includePluginDependencies>
+        <mainClass>picocli.codegen.docgen.manpage.ManPageGenerator</mainClass>
+        <arguments>
+          <argument>--outdir=${project.build.directory}/generated-picocli-docs</argument>
+          <argument>org.aksw.rdf_processing_toolkit.cli.cmd.CmdRptMain</argument>
+        </arguments>
+      </configuration>
+      <dependencies>
+        <dependency>
+          <groupId>info.picocli</groupId>
+          <artifactId>picocli-codegen</artifactId>
+          <version>4.7.4</version>
+          <type>jar</type>
+        </dependency>
+      </dependencies>
+    </plugin>
+
+    <plugin>
+      <groupId>org.asciidoctor</groupId>
+      <artifactId>asciidoctor-maven-plugin</artifactId>
+      <version>2.1.0</version>
+      <executions>
+        <execution>
+          <id>output-html</id>
+          <phase>process-classes</phase>
+          <goals>
+            <goal>process-asciidoc</goal>
+          </goals>
+          <configuration>
+            <sourceHighlighter>coderay</sourceHighlighter>
+            <backend>html5</backend>
+          </configuration>
+        </execution>
+        <execution>
+          <id>output-manpage</id>
+          <phase>process-classes</phase>
+          <goals>
+            <goal>process-asciidoc</goal>
+          </goals>
+          <configuration>
+            <sourceHighlighter>coderay</sourceHighlighter>
+            <backend>manpage</backend>
+          </configuration>
+        </execution>
+      </executions>
+      <configuration>
+        <sourceDirectory>${project.build.directory}/generated-picocli-docs</sourceDirectory>
+      </configuration>
+    </plugin>			
+	</plugins></build>
+	
 	<profiles>
 		<profile>
 			<id>dist</id>