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dloop.gbf
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LOCUS BM1034 498 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes troglodytes isolate BM1034 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes troglodytes
ORGANISM Pan troglodytes troglodytes
Unclassified.
REFERENCE 1 (bases 1 to 498)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 498)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..498
/organism="Pan troglodytes troglodytes"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="BM1034"
/isolation_source="feces"
/sub_species="troglodytes"
/country="Cameroon"
tRNA complement(1..26)
/product="tRNA-Pro"
D-loop 27..>498
ORIGIN
1 aagattctaa tttaaactat tctctgttct ttcatgggga agcaaattta agtaccacct
61 aagtattggc ttattcatta caaccgctat gtatttcgta cattactgct agccaccatg
121 aatattgtac agtactataa tcactcaacc acctataata catcaaaccc accccacatt
181 acaaccttca ccccatgctt acaagcacgc acaacaatca accctcaact gtcatacata
241 aaacacaact ccaaagacat tcctccccca ccccgatatc aacagaccta ccctccctta
301 acagtacata gtacatacat ccgtacatca cacatagcac attacagtta aacctattct
361 cgtccccacg gatgcccccc ctcagatagg ggtcccttgt ccaccatcct ccgtgaaatc
421 aatatcccgc acaagagtgc tactctcctc gctccgggcc cataaaatct gggggtagct
481 aaagtgaact gtatccga
//
LOCUS BO1 481 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate BO1 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 481)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 481)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..481
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="BO1"
/isolation_source="feces"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..9)
/product="tRNA-Pro"
D-loop 10..>481
ORIGIN
1 tattctctgt tctttcatgg ggaagcaaat ttaagtacca cctaagtact ggctcattca
61 ttacaaccgc tatgtatttc gtacattact gccagccacc atgaatatcg tacggtacca
121 taattaccca actacctata acacataaaa cccaccccac attaaaacct tcaccccatg
181 cttacaagca cgcacaacaa tcaacctcta actatcaaac ataaaacaca actccaacga
241 cacttctccc ccaccccgat accaacaaac ctaccccccc ttgacaaaac atagcacata
301 caatcacaca ccgtacatag cacattacag tcaaatccat cctcgccccc acggatgatc
361 cccctcagat aggaatccct tgaccaccat cctccgtgaa atcaatatcc cgcacaagag
421 tgctactctc ctcgctccgg gcccataaca tctgggggta gctaaagtga gctgtatccg
481 g
//
LOCUS BO3 481 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate BO3 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 481)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 481)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..481
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="BO3"
/isolation_source="feces"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..9)
/product="tRNA-Pro"
D-loop 10..>481
ORIGIN
1 tattctctgt tctttcatgg ggaagcaaat ttaagtacca cctaagtact ggctcattca
61 ttacaaccgc tatgtatttc gtacattact gccagtcacc atgaatattg tacagtacca
121 taatcaccca accacctata gcacataaaa tccacctcac attaaaacct tcaccccatg
181 cttacaagca cgcacaacaa tcaaccccca actatcgaac ataaaacaca actccaacga
241 cacttctccc ccaccctaat accaacaaac ctaccctccc ttgacaaaac ataatacata
301 caatcacaca ccgtacatag cacattacag tcaaatccat ccttgccccc acggatgatc
361 cccctcagat gggaatccct tgaccaccat cctccgtgaa atcaatatcc cgcacaagag
421 tactactctc ctcgctccgg gcccataaca tctgggggta gctaaagtga actgtatccg
481 a
//
LOCUS BO4 480 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate BO4 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 480)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 480)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..480
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="BO4"
/isolation_source="feces"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..7)
/product="tRNA-Pro"
D-loop 8..>480
ORIGIN
1 ttctctgttc tttcatgggg aagcaaattt aagtaccacc taagtactgg ctcattcatt
61 acaaccgcta tgtatttcgt acattactgc cagccaccat gaatatcgta cagtactata
121 atcacccaac tacctatagt acataaaatc cactcccaca tcaagacctt caccccatgc
181 ttacaagcac gcacaacaat caactcccaa ctgtcgaaca taaaacacaa ttccaacgac
241 acccctcccc caccccgata ccaacagacc tacctcccct tgacaggaca tagtacatac
301 aaccatacac cgtacatagc acattacagt caaacccctc ctcgccccca cggatgctcc
361 ccctcagata ggaatccctt ggtcaccatc ctccgtgaaa tcaatatccc gcacaagagt
421 gctactctcc tcgctccggg cccataacat ctgggggtag ctaaagtgaa ctgtatccga
//
LOCUS BO6 480 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate BO6 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 480)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 480)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..480
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="BO6"
/isolation_source="feces"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..7)
/product="tRNA-Pro"
D-loop 8..>480
ORIGIN
1 ttctctgttc tttcatgggg aagcaaattt aagtaccacc taagtactgg ctcattcatt
61 acaaccgcta tgtatttcgt acattactgc cagccaccat gaatattgta cagtaccata
121 atcactcaac tacctataac acataaaatc caccctcaca tcaaaacctc caccctatgc
181 ttacaagcat gcacaacaat caacccccaa ctgtcgaaca taaaacacaa ctccaacgac
241 acccctcccc caccccaata tcaacagacc taccccccct tgacagaaca tagtacatac
301 aaccatacac cgtacatagc acattacagt caaatccctc ctcgccccca cggatgctcc
361 ccttcagata ggaatccctt ggtcaccatc ctccgtgaaa tcaatatccc gcacaagagt
421 gctactctcc tcgctccggg cccataacat ctgggggtag ctaaagtgaa ctgtatccga
//
LOCUS Bandit 482 bp DNA linear PRI 21-NOV-2018
DEFINITION Pan troglodytes isolate Bandit mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes (chimpanzee)
ORGANISM Pan troglodytes
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
REFERENCE 1 (bases 1 to 482)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 482)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..482
/organism="Pan troglodytes"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="Bandit"
/isolation_source="blood"
/db_xref="taxon:9598"
tRNA complement(1..9)
/product="tRNA-Pro"
D-loop 10..>482
ORIGIN
1 tattctctgt tctttcatgg ggaagcaaat ttaagtacca cctaagtact ggctcattca
61 ttacaaccgc tatgtatttc gtacattact gccagccacc atgaatatcg tacagtacca
121 taatcaccca actacctata atacataaaa tccactccca catcaagacc ttcactccat
181 gcttacaagc acgcacaaca atcaactccc aactgtcgaa cataaaacac aattccaacg
241 acacccctcc cccaccccga taccaacaga cctacctccc cttgacagaa catagtacat
301 acaaccatac accgtacata gcacattaca gtcaaacccc tcctcgcccc cacggatgct
361 ccccctcaga taggaatccc ttggtcacca tcctccgtga aatcaatatc ccgcacaaga
421 gtgctactct cctcgctccg ggcccataac atctgggggt agctaaagtg aactgtatcc
481 ga
//
LOCUS Barbara-C0462 481 bp DNA linear PRI 21-NOV-2018
DEFINITION Pan troglodytes isolate C0462 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes (chimpanzee)
ORGANISM Pan troglodytes
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
REFERENCE 1 (bases 1 to 481)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 481)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..481
/organism="Pan troglodytes"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="C0462"
/isolation_source="blood"
/db_xref="taxon:9598"
tRNA complement(1..9)
/product="tRNA-Pro"
D-loop 10..>481
ORIGIN
1 tattctctgt tctttcatgg ggaagcaaat ttaagtacca cctaagtatt ggcttattca
61 ttacaaccgc tatgtatttc gtacattact gccagccacc atgaatattg tacagtacta
121 taatcactca actacctata acacatcaaa cccaccccac attacaacgt cccccccatg
181 cttacaagca cgtacaacaa tcaaccctca actgtcacac ataaaacaca actccaaaga
241 cactcctccc ccaccccgat accaacaaac ctacacttcc ttaacagtac atagcacata
301 caaccgcaca ccagacatgg cacattacag tcaaatccat tctcgtcccc acggatgccc
361 cccctcagat aggagtccct tgctcaccat cctccgtgaa atcaatatcc cgcacaagag
421 tgctactctc ctcgctccgg gcccataaaa tctgggggta gctaaagtga actgtatccg
481 a
//
LOCUS CC1 479 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC1 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 479)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 479)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..479
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC1"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..7)
/product="tRNA-Pro"
D-loop 8..>479
ORIGIN
1 ttctctgttc tttcatgggg aagcaaattt aagtaccacc taagtactgg ctcattcatt
61 acaaccgcta tgtatttcgt acattactgc cagccaccat gaatattgta cagtaccata
121 atcacccaac cacctatagc acataaaatc cacctcacat caaaaccttc cccccatgct
181 tacaagcacg cacaacaatc aacccccaac tatcgaacat aaaacacaac tccaacgaca
241 cttctccccc accctaatac caacaaacct accctccctt gacaaaacat aatacataca
301 atcacacacc gtacatagca cattacagtc aaatccatcc ttgcccccac ggatgatccc
361 cctcagatgg gaatcccttg gccaccatcc tccgtgaaat caatatcccg cacaagagta
421 ctactctcct cgctccgggc ccataacatc tgggggtagc taaagtgaac tgtatccga
//
LOCUS CC10 479 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC10 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 479)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 479)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..479
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC10"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..7)
/product="tRNA-Pro"
D-loop 8..>479
ORIGIN
1 ttctctgttc tttcatgggg aagcaaattt aagtaccacc taagtactgg ctcattcatt
61 acaaccgcta tgtatttcgt acattactgc cagccaccat gaatattgta cagtaccata
121 atcacccaac cacctatagc acataaaatc cacctcacat caaaaccttc accccatgct
181 tacaagcacg cacaacaatc aacccccaac tatcgaacat aaaacacaac tccaacgaca
241 cttctccccc accctaatac caacaaacct accctccctt gacaaaacat aatacataca
301 atcacacacc gtacatagca cattacagtc aaatccatcc ttgcccccac ggatgatccc
361 cctcagatgg gaatcccttg gccaccatcc tccgtgaaat caatatcccg cacaagagta
421 ctactctcct cgctccgggc ccataacatc tgggggtagc taaagtgaac tgtatccga
//
LOCUS CC11 482 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC11 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 482)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 482)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..482
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC11"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..9)
/product="tRNA-Pro"
D-loop 10..>482
ORIGIN
1 tattctctgt tctttcatgg ggaagcaaat ttaagtacca cctaagtact ggctcattca
61 ttacaaccgc tatgtatttc gtacattact gccagccacc atgaatattg tacagtacca
121 taatcaccca actacctata atacataaaa tccactccca caccagaacc ttcaccccat
181 gcttacaagc acgcacaaca atcaacctcc aactgtcgaa cataaaacac aactccaacg
241 acacccctcc cccaccccga tatcaacaga cctacccccc cttgacagaa catagtacat
301 acaatcatac accgtacata gcacattaca gtcaaactct tcctcgtccc cacggatgcc
361 ccccctcaga taggaatccc ttggtcacca tcctccgtga aatcaatatc ccgcacaaga
421 gtgctactct cctcgctccg ggcccataac atctgggggt agctaaagtg aactgtatcc
481 ga
//
LOCUS CC18 481 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC18 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 481)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 481)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..481
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC18"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..9)
/product="tRNA-Pro"
D-loop 10..>481
ORIGIN
1 tattctctgt tctttcatgg ggaagcaaat ttaagtacca cctaagtact ggctcattca
61 ttacaaccgc tatgtatttc gtacattact gccagtcacc atgaatattg tacagtacca
121 taatcaccca actacctata atacataaaa tccactccca caccaaaacc ttcaccccat
181 gcttacaagc acgcacaaca atcaacctcc aactgtcaaa cataaaacac aactccaacg
241 acacccctcc cccaccccga tatcaacaga cctacccccc ttgacagaac atagtacata
301 caatcataca ccgtacatag cacattacag tcaaactctt cctcgtcccc acggatgccc
361 cccctcagat aggaatccct tggtcaccat cctccgtgaa atcaatatcc cgcacaagag
421 tgctactctc ctcgctccgg gcccataaca tctgggggta gctaaagtga actgtatccg
481 a
//
LOCUS CC22 498 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC22 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 498)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 498)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..498
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC22"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..26)
/product="tRNA-Pro"
D-loop 27..>498
ORIGIN
1 aagattctaa tttaaactat tctctgttct ttcatgggga agcaaattta agtaccacct
61 aagtactggc tcattcatta caaccgctat gtatttcgta cattactgcc agtcaccatg
121 aatattgtac agtaccataa tcacccaact acctataata cataaaatcc actcccacac
181 caaaaccttc accccatgct tacaagcacg cacaacaatc aacctccaac tgtcaaacat
241 aaaacacaac tccaacgaca cccctccccc accccgatat caacagacct accccccttg
301 acagaacata gcacatacaa tcatacaccg tacatagcac attacagtca aactcttcct
361 cgtccccacg gatgcccccc ctcagatagg aatcccttgg tcaccatcct ccgtgaaatc
421 aatatcccgc acaagagtgc tactctcctc gctccgggcc cataacacct gggggtagct
481 aaagtgaact gtatccga
//
LOCUS CC23 499 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC23 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 499)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 499)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..499
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC23"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..26)
/product="tRNA-Pro"
D-loop 27..>499
ORIGIN
1 aagattctaa tttaaactat tctctgttct ttcatgggga agcaaattta agtaccacct
61 aagtactggc tcattcatta caaccgctat gtatttcgta cattactgcc agccaccatg
121 aatattgtac agtaccataa tcacccaact acctataaca cataaaatcc actcccacac
181 caaaaccttc accccatgct tacaagcacg cacaacaatc aacctccaac tgtcgaacat
241 aaaacacaac tccaacgaca cccctccccc accccgatat caacagacct accccccctt
301 gacagaacat agtacataca atcatacacc gtacatagca cattacagtc aaattcttcc
361 tcgtccccac ggatgccccc cctcagatag gaatcccttg gtcaccatcc tccgtgaaat
421 caatatcccg cacaagagtg ctactctcct cgctccgggc ccataacatc tgggggtagc
481 taaagtgaac tgtatccga
//
LOCUS CC4 479 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC4 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 479)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 479)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..479
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC4"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..7)
/product="tRNA-Pro"
D-loop 8..>479
ORIGIN
1 ttctctgttc tttcatgggg aagcaaattt aagtaccacc taagtactgg ctcattcatt
61 acaaccgcta tgtatttcgt acattactgc cagtcaccat gaatattgta cagtaccata
121 atcacccaac tacctataat acataaaatc cactcccaca ccaaaacctt caccccatgc
181 ttacaagcac gcacaacaat caacctccaa ctgtcaaaca taaaacacaa ctccaacgac
241 acccctcccc caccccgata tcaacagacc tacccccctt gacagaacat agtacataca
301 atcatacacc gtacatagca cattacagtc aaacccttcc tcgtccccac ggatgccccc
361 cctcagatag gaatcccttg gtcaccatcc tccgtgaaat caatatcccg cacaagagtg
421 ctactctcct cgctccgggc ccataacacc tgggggtagc taaagtgaac tgtatccga
//
LOCUS CC6 479 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC6 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 479)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 479)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..479
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC6"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..7)
/product="tRNA-Pro"
D-loop 8..>479
ORIGIN
1 ttctctgttc tttcatgggg aagcaaattt aagtaccacc taagtactgg ctcattcatt
61 acaaccgcta tgtatttcgt acattactgc cagccaccat gaatattgta cagtaccata
121 atcacccaac cacctatagc acatagaatc cacctcacat taaaaccttc accccatgct
181 tacaagcacg cacaacaatc aacccccaac tatcgaacat aaaacacaac tccaacgaca
241 cttctccccc accctaatac caacaaacct accctccctt gacaaaacat aatacataca
301 atcacacacc gtacatagca cattacagtc aaatccatcc ttgcccccac ggatgatccc
361 cctcagatgg gaatcccttg accaccatcc tccgtgaaat caatatcccg cacaagagta
421 ctactctcct cgctccgggc ccataacatc tgggggtagc taaagtgaac tgtatccga
//
LOCUS CC7 480 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC7 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 480)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 480)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..480
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC7"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..7)
/product="tRNA-Pro"
D-loop 8..>480
ORIGIN
1 ttctctgttc tttcatgggg aagcaaattt aagtaccacc taagtactgg ctcattcatt
61 acaaccgcta tgtatttcgt acattactgc cagccaccat gaatattgta cagtaccata
121 atcacccaac tacctataat acataaaatc cactcccaca ccaaaacctt caccccatgc
181 ttacaagcac gcacaacaat caacctccaa ctgtcgaaca taagacacaa ctccaacgac
241 acccctcccc caccccgata tcaacagacc tacccccccc cgacagaaca tagtacatac
301 aatcatacac cgtacatagc acattacaat caaactcttc ctcgtcccca cggatgcccc
361 ccctcagata ggaatccctt ggtcaccatc ctccgtgaaa tcaatatccc gcacaagagt
421 gctactctcc tcgctccggg cccataacat ctgggggtag ctaaagtgaa ctgtatccga
//
LOCUS CC9 500 bp DNA linear 21-NOV-2018
DEFINITION Pan troglodytes verus isolate CC9 mitochondrion.
ACCESSION
VERSION
KEYWORDS .
SOURCE mitochondrion Pan troglodytes verus
ORGANISM Pan troglodytes verus
Unclassified.
REFERENCE 1 (bases 1 to 500)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE CD4 receptor diversity in chimpanzees protects against SIV
infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 500)
AUTHORS Bibollet-Ruche,F., Russell,R.M., Liu,W., Stewart-Jones,G.B.E.,
Li,Y., Learn,G.H., Smith,A.G., Gondim,M.V.P., Plenderleith,L.J.,
Decker,J.M., Easlick,J.L., Wetzel,K.S., Collman,R.G., Ding,S.,
Finzi,A., Ayouba,A., Peeters,M., Leendertz,F.H., van Schijndel,J.,
Goedmakers,A., Ton,E., Boesch,C., Kuehl,H., Arandjelovic,M.,
Dieguez,P., Murai,M., Colin,C., Speede,S., Gonder,K.M.,
Georgiev,A.V., Mueller,M.N., Sommer,V., Sanz,C.M., Morgan,D.B.,
Atencia,R., Cox,D., Piel,A.K., Stewart,F.A., Ndjango,J.-B.N.,
Mjungu,D., Lonsdorf,E.V., Pusey,A.E., Bertolani,P., Hart,J.A.,
Hart,T.B., Kwong,P.D., Sharp,P.M., Shaw,G.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) Dept. of Medicine, University of
Pennsylvania Perelman School of Medicine, 3610 Hamilton Walk,
Philadelphia, PA 19104-6076, United States of America
FEATURES Location/Qualifiers
source 1..500
/organism="Pan troglodytes verus"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/isolate="CC9"
/isolation_source="blood"
/sub_species="verus"
/country="Guinea"
tRNA complement(1..26)