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discrep_report.txt
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Discrepancy Report Results
Summary
MISSING_PROTEIN_ID:1 proteins have invalid IDs.
DISC_SOURCE_QUALS_ASNDISC:country (some missing, some duplicate)
DISC_SOURCE_QUALS_ASNDISC:isolate (all present, all unique)
DISC_SOURCE_QUALS_ASNDISC:isolation-source (all present, some duplicate)
DISC_SOURCE_QUALS_ASNDISC:sub-species (some missing, some duplicate)
DISC_SOURCE_QUALS_ASNDISC:taxname (all present, some duplicate)
DISC_SOURCE_QUALS_ASNDISC:taxid (some missing, all same)
DISC_SOURCE_QUALS_ASNDISC:location (all present, all same)
DISC_FEATURE_COUNT:gene: 1 present
DISC_FEATURE_COUNT:CDS: 1 present
DISC_FEATURE_COUNT:tRNA: 127 present
DISC_FEATURE_COUNT:d_loop: 131 present
MISSING_GENES:127 features have no genes.
DISC_COUNT_NUCLEOTIDES:131 nucleotide Bioseqs are present
INCONSISTENT_BIOSOURCE:131 inconsistent contig sources (subsource qualifiers differ, taxnames differ, Different isolate values, Different sub-species values)
FIND_BADLEN_TRNAS:125 tRNAs are too short
DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
DISC_BAD_BACTERIAL_GENE_NAME:1 bacterial genes do not start with lowercase letters
MISSING_GENOMEASSEMBLY_COMMENTS:131 bioseqs are missing GenomeAssembly structured comments
SHOW_TRANSL_EXCEPT:1 coding regions have a translation exception
MOLTYPE_NOT_MRNA:131 molecule types are not set as mRNA.
TECHNIQUE_NOT_TSA:131 technique are not set as TSA
MISSING_STRUCTURED_COMMENT:131 sequences do not include structured comments.
MISSING_PROJECT:132 sequences do not include project.
DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
Detailed Report
DiscRep_ALL:MISSING_PROTEIN_ID::1 proteins have invalid IDs.
dloop:SY94_1 (length 20)
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::country (some missing, some duplicate)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::6 sources are missing country
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::40 sources have 'Cameroon' for country
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::10 sources have 'Central African Republic' for country
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::3 sources have 'Cote d'Ivoire' for country
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::8 sources have 'Gabon' for country
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::23 sources have 'Guinea' for country
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::2 sources have 'Guinea-Bissau' for country
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::6 sources have 'Nigeria' for country
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::33 sources have 'Republic of the Congo' for country
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::isolate (all present, all unique)
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::isolation-source (all present, some duplicate)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::63 sources have 'blood' for isolation-source
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::68 sources have 'feces' for isolation-source
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::sub-species (some missing, some duplicate)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::6 sources are missing sub-species
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::10 sources have 'ellioti' for sub-species
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::3 sources have 'schweinfurthii' for sub-species
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::84 sources have 'troglodytes' for sub-species
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::28 sources have 'verus' for sub-species
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, some duplicate)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::6 sources have 'Pan troglodytes' for taxname
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::10 sources have 'Pan troglodytes ellioti' for taxname
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::3 sources have 'Pan troglodytes schweinfurthii' for taxname
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::84 sources have 'Pan troglodytes troglodytes' for taxname
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::28 sources have 'Pan troglodytes verus' for taxname
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxid (some missing, all same)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::125 sources are missing taxid
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::6 sources have '9598' for taxid
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::location (all present, all same)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::131 sources have 'mitochondrion' for location
DiscRep_ALL:DISC_FEATURE_COUNT::gene: 1 present
DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 1 present
DiscRep_ALL:DISC_FEATURE_COUNT::tRNA: 127 present
DiscRep_ALL:DISC_FEATURE_COUNT::d_loop: 131 present
DiscRep_ALL:MISSING_GENES::127 features have no genes.
dloop:tRNA Pro BM1034:c26-1
dloop:tRNA Pro BO1:c9-1
dloop:tRNA Pro BO3:c9-1
dloop:tRNA Pro BO4:c7-1
dloop:tRNA Pro BO6:c7-1
dloop:tRNA Pro Bandit:c9-1
dloop:tRNA Pro Barbara-C0462:c9-1
dloop:tRNA Pro CC1:c7-1
dloop:tRNA Pro CC10:c7-1
dloop:tRNA Pro CC11:c9-1
dloop:tRNA Pro CC18:c9-1
dloop:tRNA Pro CC22:c26-1
dloop:tRNA Pro CC23:c26-1
dloop:tRNA Pro CC4:c7-1
dloop:tRNA Pro CC6:c7-1
dloop:tRNA Pro CC7:c7-1
dloop:tRNA Pro CC9:c26-1
dloop:tRNA Pro CH27:c7-1
dloop:tRNA Pro CH29:c7-1
dloop:tRNA Pro CH30:c7-1
dloop:tRNA Pro CP1973:c26-1
dloop:tRNA Pro CR0724:c9-1
dloop:tRNA Pro CR0765:c9-1
dloop:tRNA Pro CR0801:c9-1
dloop:tRNA Pro CR5157:c9-1
dloop:tRNA Pro CR5159:c9-1
dloop:tRNA Pro Cheeta-C0438:c9-1
dloop:tRNA Pro Cissie-C0526:c9-1
dloop:tRNA Pro GA1:c11-1
dloop:tRNA Pro GA13:c7-1
dloop:tRNA Pro GA18:c26-1
dloop:tRNA Pro GA2:c26-1
dloop:tRNA Pro GA4:c7-1
dloop:tRNA Pro GA7:c26-1
dloop:tRNA Pro GT134:c9-1
dloop:tRNA Pro GT202:c9-1
dloop:tRNA Pro GT42:c9-1
dloop:tRNA Pro GT617:c9-1
dloop:tRNA Pro GT707:c9-1
dloop:tRNA Pro GT708:c26-1
dloop:tRNA Pro K1184:c26-1
dloop:tRNA Pro K1185:c26-1
dloop:tRNA Pro LB714:c9-1
dloop:tRNA Pro LB730:c9-1
dloop:tRNA Pro LO36:c8-1
dloop:tRNA Pro LO37:c8-1
dloop:tRNA Pro LO50:c8-1
dloop:tRNA Pro LO51:c8-1
dloop:tRNA Pro LO64:c8-1
dloop:tRNA Pro LP12:c26-1
dloop:tRNA Pro LP28:c26-1
dloop:tRNA Pro LP8:c26-1
dloop:tRNA Pro MB762:c9-1
dloop:tRNA Pro MB767:c9-1
dloop:tRNA Pro MB807:c9-1
dloop:tRNA Pro MB812:c9-1
dloop:tRNA Pro MB897:c9-1
dloop:tRNA Pro ME2515:c7-1
dloop:tRNA Pro ME2516:c7-1
dloop:tRNA Pro ME2519:c7-1
dloop:tRNA Pro ME2520:c7-1
dloop:tRNA Pro ME2524:c7-1
dloop:tRNA Pro ME2526:c7-1
dloop:tRNA Pro ME2532:c7-1
dloop:tRNA Pro ME2535:c7-1
dloop:tRNA Pro ME2536:c7-1
dloop:tRNA Pro Merlin-C0627:c9-1
dloop:tRNA Pro NB1:c7-1
dloop:tRNA Pro NB16:c7-1
dloop:tRNA Pro NB186:c7-1
dloop:tRNA Pro NB198:c7-1
dloop:tRNA Pro NB2:c8-1
dloop:tRNA Pro NB3:c7-1
dloop:tRNA Pro NB43:c7-1
dloop:tRNA Pro NB49:c7-1
dloop:tRNA Pro NB6:c7-1
dloop:tRNA Pro ND3100:c26-1
dloop:tRNA Pro Rita-C0606:c9-1
dloop:tRNA Pro SL994:c26-1
dloop:tRNA Pro SY103:c26-1
dloop:tRNA Pro SY113:c18-1
dloop:tRNA Pro SY119:c7-1
dloop:tRNA Pro SY130:c26-1
dloop:tRNA Pro SY138:c26-1
dloop:tRNA Pro SY142:c26-1
dloop:tRNA Pro SY146:c26-1
dloop:tRNA Pro SY148:c26-1
dloop:tRNA Pro SY16:c26-1
dloop:tRNA Pro SY2:c26-1
dloop:tRNA Pro SY24:c26-1
dloop:tRNA Pro SY29:c26-1
dloop:tRNA Pro SY3:c26-1
dloop:tRNA Pro SY30:c26-1
dloop:tRNA Pro SY35:c18-1
dloop:tRNA Pro SY38:c26-1
dloop:tRNA Pro SY43:c26-1
dloop:tRNA Pro SY47:c26-1
dloop:tRNA Pro SY5:c26-1
dloop:tRNA Pro SY55:c26-1
dloop:tRNA Pro SY67:c26-1
dloop:tRNA Pro SY72:c7-1
dloop:tRNA Pro SY78:c26-1
dloop:tRNA Pro SY86:c7-1
dloop:tRNA Thr SY94:62-127
dloop:tRNA Pro SY94:c197-130
dloop:tRNA Pro TC1:c26-1
dloop:tRNA Pro TC10:c26-1
dloop:tRNA Pro TC11:c26-1
dloop:tRNA Pro TC12:c26-1
dloop:tRNA Pro TC13:c26-1
dloop:tRNA Pro TC14:c26-1
dloop:tRNA Pro TC15:c26-1
dloop:tRNA Pro TC17:c26-1
dloop:tRNA Pro TC19:c26-1
dloop:tRNA Pro TC2:c26-1
dloop:tRNA Pro TC20:c26-1
dloop:tRNA Pro TC21:c26-1
dloop:tRNA Pro TC22:c26-1
dloop:tRNA Pro TC23:c18-1
dloop:tRNA Pro TC24:c26-1
dloop:tRNA Pro TC3:c26-1
dloop:tRNA Pro TC4:c26-1
dloop:tRNA Pro TC5:c26-1
dloop:tRNA Pro TC6:c26-1
dloop:tRNA Pro TC7:c26-1
dloop:tRNA Pro TC8:c26-1
dloop:tRNA Pro TC9:c26-1
DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::131 nucleotide Bioseqs are present
dloop:BM1034 (length 498)
dloop:BO1 (length 481)
dloop:BO3 (length 481)
dloop:BO4 (length 480)
dloop:BO6 (length 480)
dloop:Bandit (length 482)
dloop:Barbara-C0462 (length 481)
dloop:CC1 (length 479)
dloop:CC10 (length 479)
dloop:CC11 (length 482)
dloop:CC18 (length 481)
dloop:CC22 (length 498)
dloop:CC23 (length 499)
dloop:CC4 (length 479)
dloop:CC6 (length 479)
dloop:CC7 (length 480)
dloop:CC9 (length 500)
dloop:CH27 (length 480)
dloop:CH29 (length 479)
dloop:CH30 (length 480)
dloop:CP1973 (length 499)
dloop:CR0724 (length 482)
dloop:CR0765 (length 481)
dloop:CR0801 (length 481)
dloop:CR5157 (length 482)
dloop:CR5159 (length 481)
dloop:Cheeta-C0438 (length 481)
dloop:Cissie-C0526 (length 481)
dloop:GA1 (length 484)
dloop:GA13 (length 480)
dloop:GA18 (length 499)
dloop:GA2 (length 499)
dloop:GA4 (length 480)
dloop:GA7 (length 499)
dloop:GT134 (length 481)
dloop:GT139 (length 470)
dloop:GT143 (length 470)
dloop:GT146 (length 470)
dloop:GT169 (length 470)
dloop:GT19 (length 470)
dloop:GT202 (length 481)
dloop:GT42 (length 481)
dloop:GT617 (length 482)
dloop:GT707 (length 481)
dloop:GT708 (length 500)
dloop:K1184 (length 499)
dloop:K1185 (length 498)
dloop:LB714 (length 481)
dloop:LB730 (length 483)
dloop:LO36 (length 480)
dloop:LO37 (length 480)
dloop:LO50 (length 480)
dloop:LO51 (length 480)
dloop:LO64 (length 480)
dloop:LP12 (length 500)
dloop:LP28 (length 500)
dloop:LP8 (length 500)
dloop:MB762 (length 481)
dloop:MB767 (length 481)
dloop:MB807 (length 481)
dloop:MB812 (length 481)
dloop:MB897 (length 481)
dloop:ME2515 (length 481)
dloop:ME2516 (length 479)
dloop:ME2519 (length 479)
dloop:ME2520 (length 481)
dloop:ME2524 (length 479)
dloop:ME2526 (length 479)
dloop:ME2532 (length 479)
dloop:ME2535 (length 481)
dloop:ME2536 (length 479)
dloop:Merlin-C0627 (length 483)
dloop:NB1 (length 479)
dloop:NB16 (length 479)
dloop:NB186 (length 481)
dloop:NB198 (length 480)
dloop:NB2 (length 480)
dloop:NB3 (length 478)
dloop:NB43 (length 480)
dloop:NB49 (length 478)
dloop:NB6 (length 480)
dloop:ND3100 (length 498)
dloop:Rita-C0606 (length 480)
dloop:SL994 (length 498)
dloop:SY103 (length 498)
dloop:SY113 (length 490)
dloop:SY119 (length 479)
dloop:SY130 (length 498)
dloop:SY138 (length 498)
dloop:SY142 (length 499)
dloop:SY146 (length 499)
dloop:SY148 (length 498)
dloop:SY16 (length 499)
dloop:SY2 (length 499)
dloop:SY24 (length 498)
dloop:SY29 (length 498)
dloop:SY3 (length 500)
dloop:SY30 (length 499)
dloop:SY35 (length 492)
dloop:SY38 (length 499)
dloop:SY43 (length 498)
dloop:SY47 (length 499)
dloop:SY5 (length 498)
dloop:SY55 (length 498)
dloop:SY67 (length 498)
dloop:SY72 (length 479)
dloop:SY78 (length 498)
dloop:SY86 (length 479)
dloop:SY94 (length 865)
dloop:TC1 (length 498)
dloop:TC10 (length 498)
dloop:TC11 (length 498)
dloop:TC12 (length 498)
dloop:TC13 (length 500)
dloop:TC14 (length 498)
dloop:TC15 (length 498)
dloop:TC17 (length 498)
dloop:TC19 (length 498)
dloop:TC2 (length 498)
dloop:TC20 (length 498)
dloop:TC21 (length 498)
dloop:TC22 (length 498)
dloop:TC23 (length 484)
dloop:TC24 (length 498)
dloop:TC3 (length 498)
dloop:TC4 (length 498)
dloop:TC5 (length 498)
dloop:TC6 (length 498)
dloop:TC7 (length 498)
dloop:TC8 (length 498)
dloop:TC9 (length 498)
DiscRep_ALL:INCONSISTENT_BIOSOURCE::131 inconsistent contig sources (subsource qualifiers differ, taxnames differ, Different isolate values, Different sub-species values)
dloop:BM1034:Pan troglodytes troglodytes
dloop:BM1034 (length 498)
dloop:BO1:Pan troglodytes verus
dloop:BO1 (length 481)
dloop:BO3:Pan troglodytes verus
dloop:BO3 (length 481)
dloop:BO4:Pan troglodytes verus
dloop:BO4 (length 480)
dloop:BO6:Pan troglodytes verus
dloop:BO6 (length 480)
dloop:Bandit:Pan troglodytes
dloop:Bandit (length 482)
dloop:Barbara-C0462:Pan troglodytes
dloop:Barbara-C0462 (length 481)
dloop:CC1:Pan troglodytes verus
dloop:CC1 (length 479)
dloop:CC10:Pan troglodytes verus
dloop:CC10 (length 479)
dloop:CC11:Pan troglodytes verus
dloop:CC11 (length 482)
dloop:CC18:Pan troglodytes verus
dloop:CC18 (length 481)
dloop:CC22:Pan troglodytes verus
dloop:CC22 (length 498)
dloop:CC23:Pan troglodytes verus
dloop:CC23 (length 499)
dloop:CC4:Pan troglodytes verus
dloop:CC4 (length 479)
dloop:CC6:Pan troglodytes verus
dloop:CC6 (length 479)
dloop:CC7:Pan troglodytes verus
dloop:CC7 (length 480)
dloop:CC9:Pan troglodytes verus
dloop:CC9 (length 500)
dloop:CH27:Pan troglodytes verus
dloop:CH27 (length 480)
dloop:CH29:Pan troglodytes verus
dloop:CH29 (length 479)
dloop:CH30:Pan troglodytes verus
dloop:CH30 (length 480)
dloop:CP1973:Pan troglodytes troglodytes
dloop:CP1973 (length 499)
dloop:CR0724:Pan troglodytes troglodytes
dloop:CR0724 (length 482)
dloop:CR0765:Pan troglodytes troglodytes
dloop:CR0765 (length 481)
dloop:CR0801:Pan troglodytes troglodytes
dloop:CR0801 (length 481)
dloop:CR5157:Pan troglodytes troglodytes
dloop:CR5157 (length 482)
dloop:CR5159:Pan troglodytes troglodytes
dloop:CR5159 (length 481)
dloop:Cheeta-C0438:Pan troglodytes
dloop:Cheeta-C0438 (length 481)
dloop:Cissie-C0526:Pan troglodytes
dloop:Cissie-C0526 (length 481)
dloop:GA1:Pan troglodytes ellioti
dloop:GA1 (length 484)
dloop:GA13:Pan troglodytes ellioti
dloop:GA13 (length 480)
dloop:GA18:Pan troglodytes ellioti
dloop:GA18 (length 499)
dloop:GA2:Pan troglodytes ellioti
dloop:GA2 (length 499)
dloop:GA4:Pan troglodytes ellioti
dloop:GA4 (length 480)
dloop:GA7:Pan troglodytes ellioti
dloop:GA7 (length 499)
dloop:GT134:Pan troglodytes troglodytes
dloop:GT134 (length 481)
dloop:GT139:Pan troglodytes troglodytes
dloop:GT139 (length 470)
dloop:GT143:Pan troglodytes troglodytes
dloop:GT143 (length 470)
dloop:GT146:Pan troglodytes troglodytes
dloop:GT146 (length 470)
dloop:GT169:Pan troglodytes troglodytes
dloop:GT169 (length 470)
dloop:GT19:Pan troglodytes troglodytes
dloop:GT19 (length 470)
dloop:GT202:Pan troglodytes troglodytes
dloop:GT202 (length 481)
dloop:GT42:Pan troglodytes troglodytes
dloop:GT42 (length 481)
dloop:GT617:Pan troglodytes troglodytes
dloop:GT617 (length 482)
dloop:GT707:Pan troglodytes troglodytes
dloop:GT707 (length 481)
dloop:GT708:Pan troglodytes troglodytes
dloop:GT708 (length 500)
dloop:K1184:Pan troglodytes verus
dloop:K1184 (length 499)
dloop:K1185:Pan troglodytes verus
dloop:K1185 (length 498)
dloop:LB714:Pan troglodytes troglodytes
dloop:LB714 (length 481)
dloop:LB730:Pan troglodytes troglodytes
dloop:LB730 (length 483)
dloop:LO36:Pan troglodytes troglodytes
dloop:LO36 (length 480)
dloop:LO37:Pan troglodytes troglodytes
dloop:LO37 (length 480)
dloop:LO50:Pan troglodytes troglodytes
dloop:LO50 (length 480)
dloop:LO51:Pan troglodytes troglodytes
dloop:LO51 (length 480)
dloop:LO64:Pan troglodytes troglodytes
dloop:LO64 (length 480)
dloop:LP12:Pan troglodytes troglodytes
dloop:LP12 (length 500)
dloop:LP28:Pan troglodytes troglodytes
dloop:LP28 (length 500)
dloop:LP8:Pan troglodytes troglodytes
dloop:LP8 (length 500)
dloop:MB762:Pan troglodytes troglodytes
dloop:MB762 (length 481)
dloop:MB767:Pan troglodytes troglodytes
dloop:MB767 (length 481)
dloop:MB807:Pan troglodytes troglodytes
dloop:MB807 (length 481)
dloop:MB812:Pan troglodytes troglodytes
dloop:MB812 (length 481)
dloop:MB897:Pan troglodytes troglodytes
dloop:MB897 (length 481)
dloop:ME2515:Pan troglodytes troglodytes
dloop:ME2515 (length 481)
dloop:ME2516:Pan troglodytes troglodytes
dloop:ME2516 (length 479)
dloop:ME2519:Pan troglodytes troglodytes
dloop:ME2519 (length 479)
dloop:ME2520:Pan troglodytes troglodytes
dloop:ME2520 (length 481)
dloop:ME2524:Pan troglodytes troglodytes
dloop:ME2524 (length 479)
dloop:ME2526:Pan troglodytes troglodytes
dloop:ME2526 (length 479)
dloop:ME2532:Pan troglodytes troglodytes
dloop:ME2532 (length 479)
dloop:ME2535:Pan troglodytes troglodytes
dloop:ME2535 (length 481)
dloop:ME2536:Pan troglodytes troglodytes
dloop:ME2536 (length 479)
dloop:Merlin-C0627:Pan troglodytes
dloop:Merlin-C0627 (length 483)
dloop:NB1:Pan troglodytes verus
dloop:NB1 (length 479)
dloop:NB16:Pan troglodytes verus
dloop:NB16 (length 479)
dloop:NB186:Pan troglodytes verus
dloop:NB186 (length 481)
dloop:NB198:Pan troglodytes verus
dloop:NB198 (length 480)
dloop:NB2:Pan troglodytes verus
dloop:NB2 (length 480)
dloop:NB3:Pan troglodytes verus
dloop:NB3 (length 478)
dloop:NB43:Pan troglodytes verus
dloop:NB43 (length 480)
dloop:NB49:Pan troglodytes verus
dloop:NB49 (length 478)
dloop:NB6:Pan troglodytes verus
dloop:NB6 (length 480)
dloop:ND3100:Pan troglodytes troglodytes
dloop:ND3100 (length 498)
dloop:Rita-C0606:Pan troglodytes
dloop:Rita-C0606 (length 480)
dloop:SL994:Pan troglodytes troglodytes
dloop:SL994 (length 498)
dloop:SY103:Pan troglodytes troglodytes
dloop:SY103 (length 498)
dloop:SY113:Pan troglodytes troglodytes
dloop:SY113 (length 490)
dloop:SY119:Pan troglodytes troglodytes
dloop:SY119 (length 479)
dloop:SY130:Pan troglodytes troglodytes
dloop:SY130 (length 498)
dloop:SY138:Pan troglodytes troglodytes
dloop:SY138 (length 498)
dloop:SY142:Pan troglodytes ellioti
dloop:SY142 (length 499)
dloop:SY146:Pan troglodytes troglodytes
dloop:SY146 (length 499)
dloop:SY148:Pan troglodytes troglodytes
dloop:SY148 (length 498)
dloop:SY16:Pan troglodytes ellioti
dloop:SY16 (length 499)
dloop:SY2:Pan troglodytes troglodytes
dloop:SY2 (length 499)
dloop:SY24:Pan troglodytes troglodytes
dloop:SY24 (length 498)
dloop:SY29:Pan troglodytes troglodytes
dloop:SY29 (length 498)
dloop:SY3:Pan troglodytes troglodytes
dloop:SY3 (length 500)
dloop:SY30:Pan troglodytes troglodytes
dloop:SY30 (length 499)
dloop:SY35:Pan troglodytes troglodytes
dloop:SY35 (length 492)
dloop:SY38:Pan troglodytes ellioti
dloop:SY38 (length 499)
dloop:SY43:Pan troglodytes troglodytes
dloop:SY43 (length 498)
dloop:SY47:Pan troglodytes troglodytes
dloop:SY47 (length 499)
dloop:SY5:Pan troglodytes troglodytes
dloop:SY5 (length 498)
dloop:SY55:Pan troglodytes troglodytes
dloop:SY55 (length 498)
dloop:SY67:Pan troglodytes troglodytes
dloop:SY67 (length 498)
dloop:SY72:Pan troglodytes troglodytes
dloop:SY72 (length 479)
dloop:SY78:Pan troglodytes troglodytes
dloop:SY78 (length 498)
dloop:SY86:Pan troglodytes troglodytes
dloop:SY86 (length 479)
dloop:SY94:Pan troglodytes ellioti
dloop:SY94 (length 865)
dloop:TC1:Pan troglodytes troglodytes
dloop:TC1 (length 498)
dloop:TC10:Pan troglodytes schweinfurthii
dloop:TC10 (length 498)
dloop:TC11:Pan troglodytes schweinfurthii
dloop:TC11 (length 498)
dloop:TC12:Pan troglodytes troglodytes
dloop:TC12 (length 498)
dloop:TC13:Pan troglodytes troglodytes
dloop:TC13 (length 500)
dloop:TC14:Pan troglodytes troglodytes
dloop:TC14 (length 498)
dloop:TC15:Pan troglodytes troglodytes
dloop:TC15 (length 498)
dloop:TC17:Pan troglodytes troglodytes
dloop:TC17 (length 498)
dloop:TC19:Pan troglodytes troglodytes
dloop:TC19 (length 498)
dloop:TC2:Pan troglodytes troglodytes
dloop:TC2 (length 498)
dloop:TC20:Pan troglodytes troglodytes
dloop:TC20 (length 498)
dloop:TC21:Pan troglodytes troglodytes
dloop:TC21 (length 498)
dloop:TC22:Pan troglodytes troglodytes
dloop:TC22 (length 498)
dloop:TC23:Pan troglodytes troglodytes
dloop:TC23 (length 484)
dloop:TC24:Pan troglodytes troglodytes
dloop:TC24 (length 498)
dloop:TC3:Pan troglodytes troglodytes
dloop:TC3 (length 498)
dloop:TC4:Pan troglodytes troglodytes
dloop:TC4 (length 498)
dloop:TC5:Pan troglodytes troglodytes
dloop:TC5 (length 498)
dloop:TC6:Pan troglodytes troglodytes
dloop:TC6 (length 498)
dloop:TC7:Pan troglodytes schweinfurthii
dloop:TC7 (length 498)
dloop:TC8:Pan troglodytes troglodytes
dloop:TC8 (length 498)
dloop:TC9:Pan troglodytes troglodytes
dloop:TC9 (length 498)
DiscRep_ALL:FIND_BADLEN_TRNAS::125 tRNAs are too short
dloop:tRNA Pro BM1034:c26-1
dloop:tRNA Pro BO1:c9-1
dloop:tRNA Pro BO3:c9-1
dloop:tRNA Pro BO4:c7-1
dloop:tRNA Pro BO6:c7-1
dloop:tRNA Pro Bandit:c9-1
dloop:tRNA Pro Barbara-C0462:c9-1
dloop:tRNA Pro CC1:c7-1
dloop:tRNA Pro CC10:c7-1
dloop:tRNA Pro CC11:c9-1
dloop:tRNA Pro CC18:c9-1
dloop:tRNA Pro CC22:c26-1
dloop:tRNA Pro CC23:c26-1
dloop:tRNA Pro CC4:c7-1
dloop:tRNA Pro CC6:c7-1
dloop:tRNA Pro CC7:c7-1
dloop:tRNA Pro CC9:c26-1
dloop:tRNA Pro CH27:c7-1
dloop:tRNA Pro CH29:c7-1
dloop:tRNA Pro CH30:c7-1
dloop:tRNA Pro CP1973:c26-1
dloop:tRNA Pro CR0724:c9-1
dloop:tRNA Pro CR0765:c9-1
dloop:tRNA Pro CR0801:c9-1
dloop:tRNA Pro CR5157:c9-1
dloop:tRNA Pro CR5159:c9-1
dloop:tRNA Pro Cheeta-C0438:c9-1
dloop:tRNA Pro Cissie-C0526:c9-1
dloop:tRNA Pro GA1:c11-1
dloop:tRNA Pro GA13:c7-1
dloop:tRNA Pro GA18:c26-1
dloop:tRNA Pro GA2:c26-1
dloop:tRNA Pro GA4:c7-1
dloop:tRNA Pro GA7:c26-1
dloop:tRNA Pro GT134:c9-1
dloop:tRNA Pro GT202:c9-1
dloop:tRNA Pro GT42:c9-1
dloop:tRNA Pro GT617:c9-1
dloop:tRNA Pro GT707:c9-1
dloop:tRNA Pro GT708:c26-1
dloop:tRNA Pro K1184:c26-1
dloop:tRNA Pro K1185:c26-1
dloop:tRNA Pro LB714:c9-1
dloop:tRNA Pro LB730:c9-1
dloop:tRNA Pro LO36:c8-1
dloop:tRNA Pro LO37:c8-1
dloop:tRNA Pro LO50:c8-1
dloop:tRNA Pro LO51:c8-1
dloop:tRNA Pro LO64:c8-1
dloop:tRNA Pro LP12:c26-1
dloop:tRNA Pro LP28:c26-1
dloop:tRNA Pro LP8:c26-1
dloop:tRNA Pro MB762:c9-1
dloop:tRNA Pro MB767:c9-1
dloop:tRNA Pro MB807:c9-1
dloop:tRNA Pro MB812:c9-1
dloop:tRNA Pro MB897:c9-1
dloop:tRNA Pro ME2515:c7-1
dloop:tRNA Pro ME2516:c7-1
dloop:tRNA Pro ME2519:c7-1
dloop:tRNA Pro ME2520:c7-1
dloop:tRNA Pro ME2524:c7-1
dloop:tRNA Pro ME2526:c7-1
dloop:tRNA Pro ME2532:c7-1
dloop:tRNA Pro ME2535:c7-1
dloop:tRNA Pro ME2536:c7-1
dloop:tRNA Pro Merlin-C0627:c9-1
dloop:tRNA Pro NB1:c7-1
dloop:tRNA Pro NB16:c7-1
dloop:tRNA Pro NB186:c7-1
dloop:tRNA Pro NB198:c7-1
dloop:tRNA Pro NB2:c8-1
dloop:tRNA Pro NB3:c7-1
dloop:tRNA Pro NB43:c7-1
dloop:tRNA Pro NB49:c7-1
dloop:tRNA Pro NB6:c7-1
dloop:tRNA Pro ND3100:c26-1
dloop:tRNA Pro Rita-C0606:c9-1
dloop:tRNA Pro SL994:c26-1
dloop:tRNA Pro SY103:c26-1
dloop:tRNA Pro SY113:c18-1
dloop:tRNA Pro SY119:c7-1
dloop:tRNA Pro SY130:c26-1
dloop:tRNA Pro SY138:c26-1
dloop:tRNA Pro SY142:c26-1
dloop:tRNA Pro SY146:c26-1
dloop:tRNA Pro SY148:c26-1
dloop:tRNA Pro SY16:c26-1
dloop:tRNA Pro SY2:c26-1
dloop:tRNA Pro SY24:c26-1
dloop:tRNA Pro SY29:c26-1
dloop:tRNA Pro SY3:c26-1
dloop:tRNA Pro SY30:c26-1
dloop:tRNA Pro SY35:c18-1
dloop:tRNA Pro SY38:c26-1
dloop:tRNA Pro SY43:c26-1
dloop:tRNA Pro SY47:c26-1
dloop:tRNA Pro SY5:c26-1
dloop:tRNA Pro SY55:c26-1
dloop:tRNA Pro SY67:c26-1
dloop:tRNA Pro SY72:c7-1
dloop:tRNA Pro SY78:c26-1
dloop:tRNA Pro SY86:c7-1
dloop:tRNA Pro TC1:c26-1
dloop:tRNA Pro TC10:c26-1
dloop:tRNA Pro TC11:c26-1
dloop:tRNA Pro TC12:c26-1
dloop:tRNA Pro TC13:c26-1
dloop:tRNA Pro TC14:c26-1
dloop:tRNA Pro TC15:c26-1
dloop:tRNA Pro TC17:c26-1
dloop:tRNA Pro TC19:c26-1
dloop:tRNA Pro TC2:c26-1
dloop:tRNA Pro TC20:c26-1
dloop:tRNA Pro TC21:c26-1
dloop:tRNA Pro TC22:c26-1
dloop:tRNA Pro TC23:c18-1
dloop:tRNA Pro TC24:c26-1
dloop:tRNA Pro TC3:c26-1
dloop:tRNA Pro TC4:c26-1
dloop:tRNA Pro TC5:c26-1
dloop:tRNA Pro TC6:c26-1
dloop:tRNA Pro TC7:c26-1
dloop:tRNA Pro TC8:c26-1
dloop:tRNA Pro TC9:c26-1
DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
DiscRep_ALL:DISC_BAD_BACTERIAL_GENE_NAME::1 bacterial genes do not start with lowercase letters
dloop:Gene CYTB SY94:<1-61
DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::131 bioseqs are missing GenomeAssembly structured comments
dloop:BM1034 (length 498)
dloop:BO1 (length 481)
dloop:BO3 (length 481)
dloop:BO4 (length 480)
dloop:BO6 (length 480)
dloop:Bandit (length 482)
dloop:Barbara-C0462 (length 481)
dloop:CC1 (length 479)
dloop:CC10 (length 479)
dloop:CC11 (length 482)
dloop:CC18 (length 481)
dloop:CC22 (length 498)
dloop:CC23 (length 499)
dloop:CC4 (length 479)
dloop:CC6 (length 479)
dloop:CC7 (length 480)
dloop:CC9 (length 500)
dloop:CH27 (length 480)
dloop:CH29 (length 479)
dloop:CH30 (length 480)
dloop:CP1973 (length 499)
dloop:CR0724 (length 482)
dloop:CR0765 (length 481)
dloop:CR0801 (length 481)
dloop:CR5157 (length 482)
dloop:CR5159 (length 481)
dloop:Cheeta-C0438 (length 481)
dloop:Cissie-C0526 (length 481)
dloop:GA1 (length 484)
dloop:GA13 (length 480)
dloop:GA18 (length 499)
dloop:GA2 (length 499)
dloop:GA4 (length 480)
dloop:GA7 (length 499)
dloop:GT134 (length 481)
dloop:GT139 (length 470)
dloop:GT143 (length 470)
dloop:GT146 (length 470)
dloop:GT169 (length 470)
dloop:GT19 (length 470)
dloop:GT202 (length 481)
dloop:GT42 (length 481)
dloop:GT617 (length 482)
dloop:GT707 (length 481)
dloop:GT708 (length 500)
dloop:K1184 (length 499)
dloop:K1185 (length 498)
dloop:LB714 (length 481)
dloop:LB730 (length 483)
dloop:LO36 (length 480)
dloop:LO37 (length 480)
dloop:LO50 (length 480)
dloop:LO51 (length 480)
dloop:LO64 (length 480)
dloop:LP12 (length 500)
dloop:LP28 (length 500)
dloop:LP8 (length 500)
dloop:MB762 (length 481)
dloop:MB767 (length 481)
dloop:MB807 (length 481)
dloop:MB812 (length 481)
dloop:MB897 (length 481)
dloop:ME2515 (length 481)
dloop:ME2516 (length 479)
dloop:ME2519 (length 479)
dloop:ME2520 (length 481)
dloop:ME2524 (length 479)
dloop:ME2526 (length 479)
dloop:ME2532 (length 479)
dloop:ME2535 (length 481)
dloop:ME2536 (length 479)
dloop:Merlin-C0627 (length 483)
dloop:NB1 (length 479)
dloop:NB16 (length 479)
dloop:NB186 (length 481)
dloop:NB198 (length 480)
dloop:NB2 (length 480)
dloop:NB3 (length 478)
dloop:NB43 (length 480)
dloop:NB49 (length 478)
dloop:NB6 (length 480)
dloop:ND3100 (length 498)
dloop:Rita-C0606 (length 480)
dloop:SL994 (length 498)
dloop:SY103 (length 498)
dloop:SY113 (length 490)
dloop:SY119 (length 479)
dloop:SY130 (length 498)
dloop:SY138 (length 498)
dloop:SY142 (length 499)
dloop:SY146 (length 499)
dloop:SY148 (length 498)
dloop:SY16 (length 499)
dloop:SY2 (length 499)
dloop:SY24 (length 498)
dloop:SY29 (length 498)
dloop:SY3 (length 500)
dloop:SY30 (length 499)
dloop:SY35 (length 492)
dloop:SY38 (length 499)
dloop:SY43 (length 498)
dloop:SY47 (length 499)
dloop:SY5 (length 498)
dloop:SY55 (length 498)
dloop:SY67 (length 498)
dloop:SY72 (length 479)
dloop:SY78 (length 498)
dloop:SY86 (length 479)
dloop:SY94 (length 865)
dloop:TC1 (length 498)
dloop:TC10 (length 498)
dloop:TC11 (length 498)
dloop:TC12 (length 498)
dloop:TC13 (length 500)
dloop:TC14 (length 498)
dloop:TC15 (length 498)
dloop:TC17 (length 498)
dloop:TC19 (length 498)
dloop:TC2 (length 498)
dloop:TC20 (length 498)
dloop:TC21 (length 498)
dloop:TC22 (length 498)
dloop:TC23 (length 484)
dloop:TC24 (length 498)
dloop:TC3 (length 498)
dloop:TC4 (length 498)
dloop:TC5 (length 498)
dloop:TC6 (length 498)
dloop:TC7 (length 498)
dloop:TC8 (length 498)
dloop:TC9 (length 498)
DiscRep_ALL:SHOW_TRANSL_EXCEPT::1 coding regions have a translation exception
dloop:CDS cytochrome b SY94:<1-61
DiscRep_ALL:MOLTYPE_NOT_MRNA::131 molecule types are not set as mRNA.
dloop:BM1034 (length 498)
dloop:BO1 (length 481)
dloop:BO3 (length 481)
dloop:BO4 (length 480)
dloop:BO6 (length 480)
dloop:Bandit (length 482)
dloop:Barbara-C0462 (length 481)
dloop:CC1 (length 479)
dloop:CC10 (length 479)
dloop:CC11 (length 482)
dloop:CC18 (length 481)
dloop:CC22 (length 498)
dloop:CC23 (length 499)
dloop:CC4 (length 479)
dloop:CC6 (length 479)
dloop:CC7 (length 480)
dloop:CC9 (length 500)
dloop:CH27 (length 480)
dloop:CH29 (length 479)
dloop:CH30 (length 480)
dloop:CP1973 (length 499)
dloop:CR0724 (length 482)
dloop:CR0765 (length 481)
dloop:CR0801 (length 481)
dloop:CR5157 (length 482)
dloop:CR5159 (length 481)
dloop:Cheeta-C0438 (length 481)
dloop:Cissie-C0526 (length 481)
dloop:GA1 (length 484)
dloop:GA13 (length 480)
dloop:GA18 (length 499)
dloop:GA2 (length 499)
dloop:GA4 (length 480)
dloop:GA7 (length 499)
dloop:GT134 (length 481)
dloop:GT139 (length 470)
dloop:GT143 (length 470)
dloop:GT146 (length 470)
dloop:GT169 (length 470)
dloop:GT19 (length 470)
dloop:GT202 (length 481)
dloop:GT42 (length 481)
dloop:GT617 (length 482)
dloop:GT707 (length 481)
dloop:GT708 (length 500)
dloop:K1184 (length 499)
dloop:K1185 (length 498)
dloop:LB714 (length 481)
dloop:LB730 (length 483)
dloop:LO36 (length 480)
dloop:LO37 (length 480)
dloop:LO50 (length 480)
dloop:LO51 (length 480)
dloop:LO64 (length 480)
dloop:LP12 (length 500)
dloop:LP28 (length 500)
dloop:LP8 (length 500)
dloop:MB762 (length 481)
dloop:MB767 (length 481)
dloop:MB807 (length 481)
dloop:MB812 (length 481)
dloop:MB897 (length 481)
dloop:ME2515 (length 481)
dloop:ME2516 (length 479)
dloop:ME2519 (length 479)
dloop:ME2520 (length 481)
dloop:ME2524 (length 479)
dloop:ME2526 (length 479)
dloop:ME2532 (length 479)
dloop:ME2535 (length 481)
dloop:ME2536 (length 479)
dloop:Merlin-C0627 (length 483)
dloop:NB1 (length 479)
dloop:NB16 (length 479)
dloop:NB186 (length 481)
dloop:NB198 (length 480)
dloop:NB2 (length 480)
dloop:NB3 (length 478)
dloop:NB43 (length 480)
dloop:NB49 (length 478)
dloop:NB6 (length 480)
dloop:ND3100 (length 498)
dloop:Rita-C0606 (length 480)
dloop:SL994 (length 498)
dloop:SY103 (length 498)
dloop:SY113 (length 490)
dloop:SY119 (length 479)
dloop:SY130 (length 498)
dloop:SY138 (length 498)
dloop:SY142 (length 499)
dloop:SY146 (length 499)
dloop:SY148 (length 498)
dloop:SY16 (length 499)
dloop:SY2 (length 499)
dloop:SY24 (length 498)
dloop:SY29 (length 498)
dloop:SY3 (length 500)
dloop:SY30 (length 499)
dloop:SY35 (length 492)
dloop:SY38 (length 499)
dloop:SY43 (length 498)
dloop:SY47 (length 499)
dloop:SY5 (length 498)
dloop:SY55 (length 498)
dloop:SY67 (length 498)
dloop:SY72 (length 479)
dloop:SY78 (length 498)
dloop:SY86 (length 479)
dloop:SY94 (length 865)
dloop:TC1 (length 498)
dloop:TC10 (length 498)
dloop:TC11 (length 498)
dloop:TC12 (length 498)
dloop:TC13 (length 500)
dloop:TC14 (length 498)
dloop:TC15 (length 498)
dloop:TC17 (length 498)
dloop:TC19 (length 498)
dloop:TC2 (length 498)
dloop:TC20 (length 498)
dloop:TC21 (length 498)
dloop:TC22 (length 498)
dloop:TC23 (length 484)
dloop:TC24 (length 498)
dloop:TC3 (length 498)
dloop:TC4 (length 498)
dloop:TC5 (length 498)
dloop:TC6 (length 498)
dloop:TC7 (length 498)
dloop:TC8 (length 498)
dloop:TC9 (length 498)
DiscRep_ALL:TECHNIQUE_NOT_TSA::131 technique are not set as TSA
dloop:BM1034 (length 498)
dloop:BO1 (length 481)