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Repository for FOD-Swin-Net

Python 6 Updated May 27, 2024

Night theme for Zotero UI and PDF

SCSS 2,444 39 Updated Dec 2, 2024

MNI152 Template

R 37 10 Updated May 21, 2020

Multi-site dMRI harmonization

Python 46 14 Updated Jan 9, 2025

Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images. Complements the work in Ne…

Python 85 29 Updated May 31, 2024

Harmonization of multi-site imaging data with ComBat

R 271 108 Updated Jul 7, 2023

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

Python 63 29 Updated Jul 19, 2024

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

C++ 914 229 Updated Jan 2, 2025

A fast multi-core implementation of HDBSCAN for low dimensional Euclidean spaces

Python 100 9 Updated Jan 13, 2025

A WebGL-powered Jupyter Widget for Niivue based on anywidget

Python 29 8 Updated Jan 5, 2025
Python 20 9 Updated Dec 18, 2024

Python package to interface with MRtrix3 file formats.

Python 8 5 Updated May 17, 2023

Fast linear assignment problem (LAP) solvers for Python based on c-extensions

Python 155 24 Updated Nov 29, 2024
OpenEdge ABL 188 19 Updated Nov 22, 2022

A PyTorch implementation of "Multimodal Generative Models for Scalable Weakly-Supervised Learning" (https://arxiv.org/abs/1802.05335)

Python 156 36 Updated Aug 17, 2018

Automatic White Matter Bundle Segmentation

Python 233 74 Updated Oct 17, 2023
Python 2 Updated Jan 25, 2024

A Nextflow pipeline for diffusion MRI quality check

Nextflow 4 7 Updated Nov 24, 2023

Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch

Python 21,438 3,143 Updated Jan 4, 2025

PyTorch implementation of MAE https//arxiv.org/abs/2111.06377

Python 7,492 1,231 Updated Jul 23, 2024

This is an official implementation for "SimMIM: A Simple Framework for Masked Image Modeling".

Python 940 88 Updated Sep 29, 2022

Large-scale Self-supervised Pre-training Across Tasks, Languages, and Modalities

Python 20,569 2,581 Updated Jan 7, 2025

Code base for the paper ViT-AE++: Improving Vision Transformer Autoencoder for Self-supervised Medical Image Representations

Python 47 4 Updated Nov 4, 2024

Anisotropic Density-Based Trajectory Clustering with Noise

Python 5 4 Updated Jan 18, 2021

A CNN Variational Autoencoder (CNN-VAE) implemented in PyTorch

Jupyter Notebook 299 64 Updated May 31, 2020
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