Stars
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images. Complements the work in Ne…
Harmonization of multi-site imaging data with ComBat
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
A fast multi-core implementation of HDBSCAN for low dimensional Euclidean spaces
A WebGL-powered Jupyter Widget for Niivue based on anywidget
Python package to interface with MRtrix3 file formats.
Fast linear assignment problem (LAP) solvers for Python based on c-extensions
A PyTorch implementation of "Multimodal Generative Models for Scalable Weakly-Supervised Learning" (https://arxiv.org/abs/1802.05335)
A Nextflow pipeline for diffusion MRI quality check
Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch
PyTorch implementation of MAE https//arxiv.org/abs/2111.06377
This is an official implementation for "SimMIM: A Simple Framework for Masked Image Modeling".
Large-scale Self-supervised Pre-training Across Tasks, Languages, and Modalities
Code base for the paper ViT-AE++: Improving Vision Transformer Autoencoder for Self-supervised Medical Image Representations
Anisotropic Density-Based Trajectory Clustering with Noise
A CNN Variational Autoencoder (CNN-VAE) implemented in PyTorch