Merge pull request #1589 from ScilifelabDataCentre/codecov

Fix codecov action

.github/workflows/docker-compose-tests.yml

@@ -15,14 +15,18 @@ jobs:
     concurrency:
       group: ${{ github.ref }}-pytest
       cancel-in-progress: true
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
 
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Run tests against database container
-        run: docker compose -f docker-compose.yml -f tests/docker-compose-test.yml up --build --exit-code-from backend
+        run: |
+          pip install -r tests/requirements-test.txt
+          docker compose -f docker-compose.yml \
+            -f tests/docker-compose-test.yml up \
+            --build --exit-code-from backend
 
       - name: Setup upterm session
         uses: lhotari/action-upterm@v1
@@ -31,7 +35,7 @@ jobs:
           ## If no one connects after 5 minutes, shut down server.
           wait-timeout-minutes: 5
 
-      - uses: codecov/codecov-action@v4
+      - uses: codecov/codecov-action@v5
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
           files: ./coverage/report.xml

README.md

@@ -20,8 +20,8 @@
    <br />
    <img alt="Linting" src="https://github.com/ScilifelabDataCentre/dds_web/actions/workflows/python-black.yml/badge.svg">
    <img alt="CodeQL" src="https://github.com/ScilifelabDataCentre/dds_web/actions/workflows/codeql-analysis.yml/badge.svg">
-   <a href="https://codecov.io/gh/ScilifelabDataCentre/dds_web">
-      <img alt="codecov" src="https://codecov.io/gh/ScilifelabDataCentre/dds_web/branch/dev/graph/badge.svg?token=r5tM6o08Sd">
+   <a href="https://codecov.io/github/ScilifelabDataCentre/dds_web" > 
+      <img src="https://codecov.io/github/ScilifelabDataCentre/dds_web/graph/badge.svg?token=r5tM6o08Sd"/> 
    </a>
    <img alt="Tests" src="https://github.com/ScilifelabDataCentre/dds_web/actions/workflows/docker-compose-tests.yml/badge.svg">
 </p>

SPRINTLOG.md

@@ -474,6 +474,7 @@ _Nothing merged during this sprint_
 - New version: 2.9.0 ([#1584](https://github.com/ScilifelabDataCentre/dds_web/pull/1584))
 - Instructions regarding database migrations moved to migrations directory, and Linkspector action added to scan for incorrect links in MD ([#1576](https://github.com/ScilifelabDataCentre/dds_web/pull/1576))
 
-# 2024-12-20 - 2025-01-10
+# 2024-12-20 - 2025-01-17
 
-- Make release template ([1587](https://github.com/ScilifelabDataCentre/dds_web/pull/1587))
+- Make release template ([#1587](https://github.com/ScilifelabDataCentre/dds_web/pull/1587))
+- Fix codecov action ([#1589](https://github.com/ScilifelabDataCentre/dds_web/pull/1589))