Modernize

.github/dependabot.yaml

@@ -0,0 +1,13 @@
+# Dependabot config to enable checking for version updates on actions
+# and open pull requests to apply those updates
+# refs:
+#   https://docs.github.com/en/code-security/dependabot/working-with-dependabot/keeping-your-actions-up-to-date-with-dependabot
+#   https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      # Check for updates to GitHub Actions every week
+      interval: "weekly"

.github/workflows/assign-issue-pr.yaml

@@ -0,0 +1,18 @@
+name: Assign Issue/PR
+
+on:
+  issues:
+    types:
+      - reopened
+      - opened
+  pull_request:
+    types:
+      - reopened
+      - opened
+
+jobs:
+  auto_assign:
+    permissions:
+      issues: write
+      pull-requests: write
+    uses: UBC-MOAD/gha-workflows/.github/workflows/auto-assign.yaml@main

.github/workflows/codeql-analysis.yaml

@@ -0,0 +1,22 @@
+name: "CodeQL"
+
+on:
+  push:
+    branches: [ '*' ]
+  schedule:
+    - cron: '01 12 * * 0'
+
+jobs:
+  analyze:
+    name: Analyze
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'python' ]
+    uses: UBC-MOAD/gha-workflows/.github/workflows/codeql-analysis.yaml@main
+    with:
+      language: ${{ matrix.language }}

.github/workflows/pytest-with-coverage.yaml

@@ -0,0 +1,25 @@
+name: pytest-with-coverage
+
+on:
+  push:
+   branches: [ '*' ]
+  # Enable workflow to be triggered from GitHub CLI, browser, or via API
+  # primarily for testing conda env solution for new Python versions
+  workflow_dispatch:
+
+jobs:
+  pytest-with-coverage:
+    permissions:
+      contents: read
+      pull-requests: write
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [ '3.12' ]
+    uses: UBC-MOAD/gha-workflows/.github/workflows/pytest-with-coverage.yaml@main
+    with:
+      python-version: ${{ matrix.python-version }}
+      conda-env-file: envs/environment-test.yaml
+      conda-env-name: bloomcast-test
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

.gitignore

@@ -313,5 +313,3 @@ flycheck_*.el
 
 # network security
 /network-security.data
-
-

.pre-commit-config.yaml

@@ -0,0 +1,21 @@
+# Git pre-commit hooks config file
+# Only takes effect if you have pre-commit installed in the env,
+# and after you run `pre-commit install`
+#
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+  # Out-of-the-box hooks from the pre-commit org
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-yaml
+      - id: check-toml
+      - id: check-added-large-files
+  # Code formatting with black
+  - repo: https://github.com/psf/black
+    rev: 25.1.0
+    hooks:
+      - id: black

__pkg_metadata__.py → bloomcast/__about__.py

@@ -1,27 +1,18 @@
-# Copyright 2011-2021 Doug Latornell and The University of British Columbia
-
+# Copyright 2011– present by Doug Latornell, Susan Allen, and The University of British Columbia
+#
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.
 # You may obtain a copy of the License at
-
-#    http://www.apache.org/licenses/LICENSE-2.0
-
+#
+#    https://www.apache.org/licenses/LICENSE-2.0
+#
 # Unless required by applicable law or agreed to in writing, software
 # distributed under the License is distributed on an "AS IS" BASIS,
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-"""Python packaging metadata for SoG-bloomcast.
-"""
-
-
-__all__ = [
-    'PROJECT', 'DESCRIPTION', 'VERSION', 'DEV_STATUS',
-]
+# SPDX-License-Identifier: Apache-2.0
 
 
-PROJECT = 'SoG-bloomcast'
-DESCRIPTION = 'Strait of Georgia spring diatom bloom predictor'
-VERSION = '3.1'
-DEV_STATUS = '5 - Production'
+__version__ = "3.1"  # pragma: no cover