v0.3.16

What's Changed

• Adding transactions by @jesper-friis in #260
• Added info about installing as dev in linux with dedicated py env. by @francescalb in #339
• Generate python api documentation by @quaat in #367
• Updated README by removing optional when dependency is needed fo build. by @francescalb in #345
• a bit more explicit that paths need to be manually set by @daniel-sintef in #347
• Improved error codes by @daniel-sintef in #348
• Fixed doxygen warnings by @jesper-friis in #359
• Added support for HDF5 v1.10+ by @jesper-friis in #357
• Fixed gcc warnings by @jesper-friis in #355
• Update CD - Docs workflow by @CasperWA in #370
• Ignore lines with the STRINGIFY() macro, which cppcheck suddenly started to compain about by @jesper-friis in #373
• Pint unit registry from ontologies by @ajeklund in #342
• Mapping function from collection by @jesper-friis in #375
• Added metaid argument to Collection.get_instances() by @jesper-friis in #374
• Give instances a default uri by @jesper-friis in #378
• Adding tips and tricks by @jesper-friis in #371
• Do not build documentation by default by @jesper-friis in #381

New Contributors

• @daniel-sintef made their first contribution in #347

Full Changelog: v0.3.15...v0.3.16

Changelog

v0.3.16 (2022-12-20)

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Implemented enhancements:

• Support newer versions of HDF5 #356
• Fix new warnings from gcc 12.2.1 #354
• Populate unit DB from ontologies #320

Fixed bugs:

• Fix doxygen warning #358

Closed issues:

• Give instances a default uri #377
• Fix new cppcheck issue #372
• Generate Python API Documentation #366
• PR339 was merged and too early #344
• Triplestore SPARQL queries #336

Merged pull requests:

• Do not build documentation by default #381 (jesper-friis)
• Alternative to hack #379 #380 (jesper-friis)
• Give instances a default uri #378 (jesper-friis)
• Mapping function from collection #375 (jesper-friis)
• Added metaid argument to Collection.get_instances() #374 (jesper-friis)
• Ignore lines with the STRINGIFY() macro, which cppcheck suddenly started to compain about #373 (jesper-friis)
• Adding tips and tricks #371 (jesper-friis)
• Update CD - Docs workflow #370 (CasperWA)
• 366 generate python api documentation #367 (quaat)
• Build against python3.7 #365 (jesper-friis)
• Updated badges on readme file #361 (jesper-friis)
• Fixed doxygen warnings #359 (jesper-friis)
• Added support for HDF5 v1.10+ #357 (jesper-friis)
• Fixed gcc warnings #355 (jesper-friis)
• Improved error codes #351 (daniel-sintef)
• Added clear description of expected return value from the Triplestore.query() method #349 (jesper-friis)
• Improved error codes #348 (daniel-sintef)
• a bit more explicit that paths need to be manually set #347 (daniel-sintef)
• Updated README by removing optional when dependency is needed fo build. #345 (francescalb)
• WIP: Pint unit registry from ontologies #342 (ajeklund)
• Qudt prefix #340 (jesper-friis)
• Added info about installing as dev in linux with dedicated py env. #339 (francescalb)
• Added OntoPy triplestore backend #329 (jesper-friis)
• Adding transactions #260 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.15

What's Changed

• Corrected route numbering in lowest_cost() by @jesper-friis in #310
• Interface for adding mapping cost by @jesper-friis in #311
• Set the SETUPTOOLS_USE_DISTUTILS env var for musslinux by @CasperWA in #317
• Updated dependencies in ci_test by @jesper-friis in #313
• Remove duplication of instancefactory by @ajeklund in #323
• MongoDB plugin by @jesper-friis in #315
• Improved Python interface for dlite properties by @jesper-friis in #312
• Support labels in dlite.triplestore by @jesper-friis in #300
• Recover from invalid storage by @jesper-friis in #293

New Contributors

• @ajeklund made their first contribution in #323

Full Changelog: v0.3.14...v0.3.15

Changelog

v0.3.15 (2022-08-24)

Full Changelog

Fixed bugs:

• musllinux wheel build failing (NumPy wheel build) #316

Closed issues:

• Duplicated code (instancefactory) #322
• Fix iterate over instances/uuids in storage #318
• Better cost function support #309
• Fix numeration of routes in dlite.mappings.MappingStep #308
• Support labels in dlite.triplestore #299
• Add ontology-based Quantity class for unit handling #294
• Recover from invalid storage in storage path #292
• SWIG destructor #282
• Redesign of the plugin API #191
• Add storage plugin suitable for large cloud-based datasets #81

Merged pull requests:

• Remove duplication of instancefactory #323 (ajeklund)
• Set the SETUPTOOLS_USE_DISTUTILS env var for musslinux #317 (CasperWA)
• MongoDB plugin #315 (jesper-friis)
• Updated dependencies in ci_test #313 (jesper-friis)
• Improved Python interface for dlite properties #312 (jesper-friis)
• Interface for adding mapping cost #311 (jesper-friis)
• Corrected route numbering in lowest_cost() #310 (jesper-friis)
• Support labels in dlite.triplestore #300 (jesper-friis)
• Recover from invalid storage #293 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.14

What's Changed

• Added openpyxl to requirements.txt by @jesper-friis in #302
• Added info on installing psycopg2 from source if failure with binary by @francescalb in #305
• A set of bug fixes some new features, including by @jesper-friis in #306
• Fix mapping costs by @jesper-friis in #307

Full Changelog: v0.3.13...v0.3.14

Changelog

v0.3.14 (2022-08-10)

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Closed issues:

• psycopg2 fails on Fedora #304

Merged pull requests:

• Fix mapping costs #307 (jesper-friis)
• A set of bug fixes some new features, including #306 (jesper-friis)
• Added info on installing psycopg2 from source if failure with binary #305 (francescalb)
• Added openpyxl to requirements.txt #302 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.13 Bug fixes

What's Changed

• Triplestore README file by @jesper-friis in #295
• Release instructions by @jesper-friis in #291
• Allow the csv plugin to read columns with dates and times by @jesper-friis in #296
• Added postgresql python tests by @jesper-friis in #297
• Fix segmentation fault for empty array of type DLiteRef. by @jesper-friis in #298

Full Changelog: v0.3.12...v0.3.13

Changelog

v0.3.13 (2022-08-08)

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Merged pull requests:

• Fix segmentation fault for empty array of type DLiteRef. #298 (jesper-friis)
• Added postgresql python tests #297 (jesper-friis)
• Allow the csv plugin to read columns with dates and times #296 (jesper-friis)
• Triplestore README file #295 (jesper-friis)
• Release instructions #291 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.12 Ontology-based mappings

Throughout update of mappings.py
* Added the Step class to represent different mapping routes and easy selection of the best one
* Added cost for different routes for automatic suggestion and sorting of routes
* Handle units correctly
* Added functions for instantiating dlite instances.
* Use the triplestore sub-package - use a Triplestore instance instead of a list of tuples
* Also ensured that functions IRIs does not change between sessions, via the new function_id() help function.
* Made MappingError a subclass of DLiteError as suggested by Francesca.
* Added getprop() method to metadata for easy access to its properties.
* Infer function_repo from triplestore.
* Added instantiate() in favour or the old and now deprecated make_instance()

Changelog

v0.3.12 (2022-08-04)

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Closed issues:

• Solve the problem in workflow 3 in the dehydrogenation example #205

Merged pull requests:

• Updated the dehydrogenation example to match changes in the datamodel ontology #285 (jesper-friis)
• Update mappings to use new triplestore #284 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.11

Add changelog for v0.3.10

v0.3.10

What's Changed

• Remove iri by @jesper-friis in #246
• Implemented calculation of sha3 hash from instance content by @jesper-friis in #245
• Fixed some memory leaks by @jesper-friis in #247
• Added support for properties referring to instances (aka. structured collection) by @jesper-friis in #253
• Removed UUID from calculation of hash. by @jesper-friis in #255
• Deploy documentation by @jesper-friis in #256
• Improve documentation by @jesper-friis in #257
• Added link to documentation from top of README file by @jesper-friis in #262
• rdflib storage by @jesper-friis in #265
• Improved error reporting from Python plugins by @jesper-friis in #266
• Changed default JSON serialisation from Python to SOFT7 by @jesper-friis in #258
• Check for stream errors before calling assert by @jesper-friis in #270
• Fixed deprecation warnings by @jesper-friis in #271
• Implemented a triplestore Python sub-package by @jesper-friis in #276
• Cleaned up Python interface to collections and added more tests. by @jesper-friis in #283
• Added some documentation about how to start a postgresql server and enable the tests by @jesper-friis in #280
• Added DOME 4.0 to acknowledgement by @jesper-friis in #287
• Converted C sources to pure ASCII to avoid problems with Visual Studio. by @jesper-friis in #288
• Safe type casting by @jesper-friis in #289

Full Changelog: v0.3.9...v0.3.10

v0.3.9

Wider arch support

DLite now has built wheels (binary installation files) for a wider range, including 32-bit newer Linux distros similar to CentOS 7.

Changelog

v0.3.9 (2022-04-27)

Full Changelog

Fixed bugs:

• Release workflow is failing #251
• psycopg2-binary install failing in CI #249
• Fix build wheel image for manylinux2014_i686 #240

Closed issues:

• Ensure that collection labels are unique #223

Merged pull requests:

• Remove pip cache folder #252 (CasperWA)
• Fix manylinux2010 psycopg2-binary issue #250 (CasperWA)
• Added option force to replace an existing instance in a collection. #248 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.8

• Made Collections a proper subclass of Instance in the Python interface
  • allows to add collections to collections from Python
  • removes the need to convert between collections and instances
  • made all instance methods available for collections
• Allowed the use of pathlib.Path for file paths in addition to pure strings in the Python interface
• Bug fixes

Changelog

v0.3.8 (2022-03-21)

Full Changelog

Closed issues:

• Python interface - make Collection a true subclass of Instance #242
• Python-plugin to accept Posix paths and not only strings #241
• Only build Docker building images if newer parent image exists #219

Merged pull requests:

• Fix 241 #244 (jesper-friis)
• Fix 242 collection #243 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.7

Changelog

v0.3.7 (2022-03-15)

Full Changelog

Fixed bugs:

• Remove empty folders for release workflow #236
• Fix weekly image builds #232

Closed issues:

• Use the requirements.txt as a hash instead of the github SHA for the cache #238
• Speed up CI build wheel for musllinux #226

Merged pull requests:

• Use hash for requirements.txt instead of git SHA #239 (CasperWA)
• Remove empty folders for publishing distributions #237 (CasperWA)
• Fix weekly image builds #233 (CasperWA)
• Use cache for numpy in testing wheel #231 (CasperWA)

* This Changelog was automatically generated by github_changelog_generator