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@SCAI-BIO

Fraunhofer SCAI Bioinformatics Department

Deparment of Bioinformatics at Fraunhofer SCAI

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  1. MultiGML MultiGML Public

    MultiGML

    Python 9 4

  2. MultiNODEs MultiNODEs Public

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  3. ExMed-BERT ExMed-BERT Public

    Python 6 1

  4. STEP STEP Public

    Data and code for STEP (Siamese Twin deep sequence Embedding of Proteins) approach.

    Python 5 3

  5. datastew datastew Public

    Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

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  6. EpilepsyOntology EpilepsyOntology Public

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Repositories

Showing 10 of 39 repositories
  • datastew Public

    Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

    SCAI-BIO/datastew’s past year of commit activity
    Python 5 Apache-2.0 0 17 0 Updated Mar 13, 2025
  • MMPK-SciML Public

    Official implementation of the paper Scientific Machine learning for predicting plasma concentrations in anti-cancer therapy

    SCAI-BIO/MMPK-SciML’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 11, 2025
  • BiomarkerOntology Public

    The Biomarker Ontology

    SCAI-BIO/BiomarkerOntology’s past year of commit activity
    0 0 0 0 Updated Mar 10, 2025
  • index Public

    Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization

    SCAI-BIO/index’s past year of commit activity
    TypeScript 3 Apache-2.0 1 12 2 Updated Mar 10, 2025
  • cv-extraction Public

    Web-Tool for LLM based CV extraction

    SCAI-BIO/cv-extraction’s past year of commit activity
    Python 0 Apache-2.0 0 4 0 Updated Mar 6, 2025
  • psystrata-explainerdashboard Public Forked from oegedijk/explainerdashboard

    Prototype Dashboard explaining Treatment Resistance Models, based on explainerdashboard

    SCAI-BIO/psystrata-explainerdashboard’s past year of commit activity
    Python 1 MIT 340 0 0 Updated Feb 26, 2025
  • syndat Public

    Synthetic data quality evaluation & visualization

    SCAI-BIO/syndat’s past year of commit activity
    Python 2 MIT 0 3 0 Updated Feb 21, 2025
  • tsnepad Public

    AD & PD cohort variable distributions

    SCAI-BIO/tsnepad’s past year of commit activity
    HTML 3 MIT 0 0 0 Updated Feb 17, 2025
  • covid-NDD-image-based-information-extraction Public

    Extracting structured knowledge from biomedical images using LLMs, focusing on COVID-19 and neurodegeneration. Leverages GPT-4o for image analysis and semantic triple extraction to build a biomedical knowledge graph.

    SCAI-BIO/covid-NDD-image-based-information-extraction’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 13, 2025
  • ExMed-BERT Public
    SCAI-BIO/ExMed-BERT’s past year of commit activity
    Python 6 1 0 0 Updated Feb 3, 2025
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