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1. MUMandCo MUMandCo Public

   MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

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2. PhasedDiploidGenomeAssemblyPipeline PhasedDiploidGenomeAssemblyPipeline Public

   Using de-novo assembly and read-phasing to assemble reference-free diploid genomes

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3. aneuploidy_detection aneuploidy_detection Public

   Script uses simply alignment and a hard threshold for deviation in order to detect changes in coverage

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4. Identifying_redundancy Identifying_redundancy Public

   Small script designed to take a single genome assembly and identify contigs which show redundancy with large contigs through BLAST alignment

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5. pggb_starship_pipeline pggb_starship_pipeline Public

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6. publicgenomes-to-buscophylogeny publicgenomes-to-buscophylogeny Public

   Downloading sets of public genomes, analysing BUSCOs and generating trees for such genomes.

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