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Minor fix in RimuIO.load_df and bose_hubbard_interaction docstrings #229

Merged
merged 3 commits into from
Dec 1, 2023
Merged

Minor fix in RimuIO.load_df and bose_hubbard_interaction docstrings #229

merged 3 commits into from
Dec 1, 2023

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yangmr04
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@yangmr04 yangmr04 commented Dec 1, 2023

Fix some incorrect formatting in RimuIO.load_df and bose_hubbard_interaction docstrings.

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coveralls commented Dec 1, 2023 •
edited
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Pull Request Test Coverage Report for Build 7065821305

  • 0 of 0 changed or added relevant lines in 0 files are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage remained the same at 94.909%
Totals Coverage Status
Change from base Build 7057728937: 0.0%
Covered Lines: 5779
Relevant Lines: 6089
💛 - Coveralls

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github-actions bot commented Dec 1, 2023 •
edited
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Benchmark result

Judge result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmarks:
  • Target: 1 Dec 2023 - 16:05
  • Baseline: 1 Dec 2023 - 16:15
  • Package commits:
  • Target: 30ba9d
  • Baseline: 0def90
  • Julia commits:
  • Target: 8e5136
  • Baseline: 8e5136
  • Julia command flags:
  • Target: None
  • Baseline: None
  • Environment variables:
  • Target: None
  • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Target

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2592 MHz 2848 s 0 s 171 s 6329 s 0 s
 #2 2445 MHz 4713 s 0 s 162 s 4482 s 0 s
 #3 3242 MHz 1721 s 0 s 171 s 7456 s 0 s
 #4 2445 MHz 983 s 0 s 203 s 8165 s 0 s
 Memory: 15.60689926147461 GB (13884.52734375 MB free)
 Uptime: 938.71 sec
 Load Avg: 1.01 1.05 0.8
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Baseline

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2595 MHz 4257 s 0 s 203 s 11168 s 0 s
 #2 2445 MHz 6545 s 0 s 204 s 8891 s 0 s
 #3 3236 MHz 2977 s 0 s 211 s 12443 s 0 s
 #4 3242 MHz 2771 s 0 s 248 s 12615 s 0 s
 Memory: 15.60689926147461 GB (13921.73046875 MB free)
 Uptime: 1568.03 sec
 Load Avg: 1.0 1.01 0.93
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Target result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmark: 1 Dec 2023 - 16:5
  • Package commit: 30ba9d
  • Julia commit: 8e5136
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["Rimu", "Exact", "Diagonalization", "2D Hubbard"] 1.759 s (5%) 5.553 ms 93.86 MiB (1%) 28407
["Rimu", "Exact", "Diagonalization", "Bose-Hubbard in momentum space"] 17.468 s (5%) 38.256 ms 367.26 MiB (1%) 2045216
["Rimu", "Exact", "Multiplication", "Momentum space"] 819.624 ms (5%) 10.92 MiB (1%) 255
["Rimu", "Exact", "Multiplication", "Transcorrelated"] 2.833 s (5%) 1.88 MiB (1%) 255
["Rimu", "FCIQMC", "(10, 20) Mom space with projected energy and initiator"] 27.254 s (5%) 52.71 MiB (1%) 1702996
["Rimu", "FCIQMC", "(4+1, 11) 2C Mom space with G2Correlators"] 25.459 s (5%) 25.692 ms 32.46 MiB (1%) 853663
["Rimu", "FCIQMC", "(50, 50) Real space"] 22.034 s (5%) 29.57 MiB (1%) 142450

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2592 MHz 2848 s 0 s 171 s 6329 s 0 s
 #2 2445 MHz 4713 s 0 s 162 s 4482 s 0 s
 #3 3242 MHz 1721 s 0 s 171 s 7456 s 0 s
 #4 2445 MHz 983 s 0 s 203 s 8165 s 0 s
 Memory: 15.60689926147461 GB (13884.52734375 MB free)
 Uptime: 938.71 sec
 Load Avg: 1.01 1.05 0.8
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Baseline result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmark: 1 Dec 2023 - 16:15
  • Package commit: 0def90
  • Julia commit: 8e5136
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["Rimu", "Exact", "Diagonalization", "2D Hubbard"] 1.772 s (5%) 3.025 ms 93.86 MiB (1%) 28407
["Rimu", "Exact", "Diagonalization", "Bose-Hubbard in momentum space"] 17.436 s (5%) 50.823 ms 367.26 MiB (1%) 2045216
["Rimu", "Exact", "Multiplication", "Momentum space"] 837.354 ms (5%) 10.92 MiB (1%) 255
["Rimu", "Exact", "Multiplication", "Transcorrelated"] 2.838 s (5%) 1.88 MiB (1%) 255
["Rimu", "FCIQMC", "(10, 20) Mom space with projected energy and initiator"] 26.924 s (5%) 16.949 ms 52.71 MiB (1%) 1702936
["Rimu", "FCIQMC", "(4+1, 11) 2C Mom space with G2Correlators"] 24.851 s (5%) 32.46 MiB (1%) 853678
["Rimu", "FCIQMC", "(50, 50) Real space"] 21.582 s (5%) 17.418 ms 29.57 MiB (1%) 142444

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2595 MHz 4257 s 0 s 203 s 11168 s 0 s
 #2 2445 MHz 6545 s 0 s 204 s 8891 s 0 s
 #3 3236 MHz 2977 s 0 s 211 s 12443 s 0 s
 #4 3242 MHz 2771 s 0 s 248 s 12615 s 0 s
 Memory: 15.60689926147461 GB (13921.73046875 MB free)
 Uptime: 1568.03 sec
 Load Avg: 1.0 1.01 0.93
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Address sizes: 48 bits physical, 48 bits virtual
Byte Order: Little Endian
CPU(s): 4
On-line CPU(s) list: 0-3
Vendor ID: AuthenticAMD
Model name: AMD EPYC 7763 64-Core Processor
CPU family: 25
Model: 1
Thread(s) per core: 2
Core(s) per socket: 2
Socket(s): 1
Stepping: 1
BogoMIPS: 4890.86
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization: AMD-V
Hypervisor vendor: Microsoft
Virtualization type: full
L1d cache: 64 KiB (2 instances)
L1i cache: 64 KiB (2 instances)
L2 cache: 1 MiB (2 instances)
L3 cache: 32 MiB (1 instance)
NUMA node(s): 1
NUMA node0 CPU(s): 0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit: Not affected
Vulnerability L1tf: Not affected
Vulnerability Mds: Not affected
Vulnerability Meltdown: Not affected
Vulnerability Mmio stale data: Not affected
Vulnerability Retbleed: Not affected
Vulnerability Spec rstack overflow: Mitigation; safe RET, no microcode
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Not affected

Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft
Benchmark result

Judge result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmarks:
  • Target: 1 Dec 2023 - 16:36
  • Baseline: 1 Dec 2023 - 16:46
  • Package commits:
  • Target: a26827
  • Baseline: 0def90
  • Julia commits:
  • Target: 8e5136
  • Baseline: 8e5136
  • Julia command flags:
  • Target: None
  • Baseline: None
  • Environment variables:
  • Target: None
  • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Target

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2997 MHz 2855 s 0 s 187 s 5605 s 0 s
 #2 2445 MHz 3143 s 0 s 163 s 5348 s 0 s
 #3 2445 MHz 2584 s 0 s 203 s 5868 s 0 s
 #4 3242 MHz 1604 s 0 s 180 s 6863 s 0 s
 Memory: 15.606903076171875 GB (13886.40234375 MB free)
 Uptime: 868.78 sec
 Load Avg: 1.05 1.05 0.79
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Baseline

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2593 MHz 4141 s 0 s 232 s 10492 s 0 s
 #2 3186 MHz 4494 s 0 s 213 s 10165 s 0 s
 #3 2445 MHz 4513 s 0 s 244 s 10119 s 0 s
 #4 3241 MHz 3262 s 0 s 229 s 11376 s 0 s
 Memory: 15.606903076171875 GB (13797.734375 MB free)
 Uptime: 1491.79 sec
 Load Avg: 1.0 1.02 0.93
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Target result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmark: 1 Dec 2023 - 16:36
  • Package commit: a26827
  • Julia commit: 8e5136
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["Rimu", "Exact", "Diagonalization", "2D Hubbard"] 1.731 s (5%) 5.469 ms 93.86 MiB (1%) 28407
["Rimu", "Exact", "Diagonalization", "Bose-Hubbard in momentum space"] 17.433 s (5%) 46.251 ms 367.26 MiB (1%) 2045216
["Rimu", "Exact", "Multiplication", "Momentum space"] 823.425 ms (5%) 10.92 MiB (1%) 255
["Rimu", "Exact", "Multiplication", "Transcorrelated"] 2.835 s (5%) 1.88 MiB (1%) 255
["Rimu", "FCIQMC", "(10, 20) Mom space with projected energy and initiator"] 27.447 s (5%) 25.409 ms 52.71 MiB (1%) 1702957
["Rimu", "FCIQMC", "(4+1, 11) 2C Mom space with G2Correlators"] 24.908 s (5%) 32.46 MiB (1%) 853664
["Rimu", "FCIQMC", "(50, 50) Real space"] 22.014 s (5%) 29.57 MiB (1%) 142449

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2997 MHz 2855 s 0 s 187 s 5605 s 0 s
 #2 2445 MHz 3143 s 0 s 163 s 5348 s 0 s
 #3 2445 MHz 2584 s 0 s 203 s 5868 s 0 s
 #4 3242 MHz 1604 s 0 s 180 s 6863 s 0 s
 Memory: 15.606903076171875 GB (13886.40234375 MB free)
 Uptime: 868.78 sec
 Load Avg: 1.05 1.05 0.79
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Baseline result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmark: 1 Dec 2023 - 16:46
  • Package commit: 0def90
  • Julia commit: 8e5136
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["Rimu", "Exact", "Diagonalization", "2D Hubbard"] 1.754 s (5%) 2.274 ms 93.86 MiB (1%) 28407
["Rimu", "Exact", "Diagonalization", "Bose-Hubbard in momentum space"] 17.393 s (5%) 54.386 ms 367.26 MiB (1%) 2045216
["Rimu", "Exact", "Multiplication", "Momentum space"] 815.480 ms (5%) 10.92 MiB (1%) 255
["Rimu", "Exact", "Multiplication", "Transcorrelated"] 2.828 s (5%) 1.88 MiB (1%) 255
["Rimu", "FCIQMC", "(10, 20) Mom space with projected energy and initiator"] 27.044 s (5%) 17.783 ms 52.71 MiB (1%) 1702842
["Rimu", "FCIQMC", "(4+1, 11) 2C Mom space with G2Correlators"] 24.363 s (5%) 32.46 MiB (1%) 853647
["Rimu", "FCIQMC", "(50, 50) Real space"] 21.797 s (5%) 13.939 ms 29.57 MiB (1%) 142444

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2593 MHz 4141 s 0 s 232 s 10492 s 0 s
 #2 3186 MHz 4494 s 0 s 213 s 10165 s 0 s
 #3 2445 MHz 4513 s 0 s 244 s 10119 s 0 s
 #4 3241 MHz 3262 s 0 s 229 s 11376 s 0 s
 Memory: 15.606903076171875 GB (13797.734375 MB free)
 Uptime: 1491.79 sec
 Load Avg: 1.0 1.02 0.93
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Address sizes: 48 bits physical, 48 bits virtual
Byte Order: Little Endian
CPU(s): 4
On-line CPU(s) list: 0-3
Vendor ID: AuthenticAMD
Model name: AMD EPYC 7763 64-Core Processor
CPU family: 25
Model: 1
Thread(s) per core: 2
Core(s) per socket: 2
Socket(s): 1
Stepping: 1
BogoMIPS: 4890.87
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization: AMD-V
Hypervisor vendor: Microsoft
Virtualization type: full
L1d cache: 64 KiB (2 instances)
L1i cache: 64 KiB (2 instances)
L2 cache: 1 MiB (2 instances)
L3 cache: 32 MiB (1 instance)
NUMA node(s): 1
NUMA node0 CPU(s): 0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit: Not affected
Vulnerability L1tf: Not affected
Vulnerability Mds: Not affected
Vulnerability Meltdown: Not affected
Vulnerability Mmio stale data: Not affected
Vulnerability Retbleed: Not affected
Vulnerability Spec rstack overflow: Mitigation; safe RET, no microcode
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Not affected

Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft
Benchmark result

Judge result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmarks:
  • Target: 1 Dec 2023 - 22:35
  • Baseline: 1 Dec 2023 - 22:45
  • Package commits:
  • Target: 6affe3
  • Baseline: 0def90
  • Julia commits:
  • Target: 8e5136
  • Baseline: 8e5136
  • Julia command flags:
  • Target: None
  • Baseline: None
  • Environment variables:
  • Target: None
  • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Target

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 3124 MHz 3466 s 0 s 162 s 6350 s 0 s
 #2 3243 MHz 2059 s 0 s 183 s 7741 s 0 s
 #3 2529 MHz 3118 s 0 s 178 s 6686 s 0 s
 #4 2618 MHz 1600 s 0 s 190 s 8174 s 0 s
 Memory: 15.60689926147461 GB (13934.9609375 MB free)
 Uptime: 1001.67 sec
 Load Avg: 1.02 1.04 0.79
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Baseline

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2645 MHz 4717 s 0 s 200 s 11302 s 0 s
 #2 2445 MHz 4398 s 0 s 217 s 11616 s 0 s
 #3 2445 MHz 4534 s 0 s 226 s 11466 s 0 s
 #4 3242 MHz 2840 s 0 s 227 s 13141 s 0 s
 Memory: 15.60689926147461 GB (13833.453125 MB free)
 Uptime: 1627.25 sec
 Load Avg: 1.0 1.0 0.92
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Target result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmark: 1 Dec 2023 - 22:35
  • Package commit: 6affe3
  • Julia commit: 8e5136
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["Rimu", "Exact", "Diagonalization", "2D Hubbard"] 1.761 s (5%) 2.149 ms 93.86 MiB (1%) 28407
["Rimu", "Exact", "Diagonalization", "Bose-Hubbard in momentum space"] 17.314 s (5%) 47.013 ms 367.26 MiB (1%) 2045216
["Rimu", "Exact", "Multiplication", "Momentum space"] 833.156 ms (5%) 10.92 MiB (1%) 255
["Rimu", "Exact", "Multiplication", "Transcorrelated"] 2.833 s (5%) 1.88 MiB (1%) 255
["Rimu", "FCIQMC", "(10, 20) Mom space with projected energy and initiator"] 27.160 s (5%) 19.449 ms 52.71 MiB (1%) 1703038
["Rimu", "FCIQMC", "(4+1, 11) 2C Mom space with G2Correlators"] 24.241 s (5%) 16.824 ms 32.53 MiB (1%) 853692
["Rimu", "FCIQMC", "(50, 50) Real space"] 22.130 s (5%) 29.57 MiB (1%) 142461

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 3124 MHz 3466 s 0 s 162 s 6350 s 0 s
 #2 3243 MHz 2059 s 0 s 183 s 7741 s 0 s
 #3 2529 MHz 3118 s 0 s 178 s 6686 s 0 s
 #4 2618 MHz 1600 s 0 s 190 s 8174 s 0 s
 Memory: 15.60689926147461 GB (13934.9609375 MB free)
 Uptime: 1001.67 sec
 Load Avg: 1.02 1.04 0.79
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Baseline result

Benchmark Report for /home/runner/work/Rimu.jl/Rimu.jl

Job Properties

  • Time of benchmark: 1 Dec 2023 - 22:45
  • Package commit: 0def90
  • Julia commit: 8e5136
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["Rimu", "Exact", "Diagonalization", "2D Hubbard"] 1.764 s (5%) 2.190 ms 93.86 MiB (1%) 28407
["Rimu", "Exact", "Diagonalization", "Bose-Hubbard in momentum space"] 17.247 s (5%) 44.539 ms 367.26 MiB (1%) 2045216
["Rimu", "Exact", "Multiplication", "Momentum space"] 832.371 ms (5%) 10.92 MiB (1%) 255
["Rimu", "Exact", "Multiplication", "Transcorrelated"] 2.831 s (5%) 1.88 MiB (1%) 255
["Rimu", "FCIQMC", "(10, 20) Mom space with projected energy and initiator"] 27.100 s (5%) 19.245 ms 52.71 MiB (1%) 1702889
["Rimu", "FCIQMC", "(4+1, 11) 2C Mom space with G2Correlators"] 24.701 s (5%) 24.426 ms 32.46 MiB (1%) 853650
["Rimu", "FCIQMC", "(50, 50) Real space"] 22.126 s (5%) 29.57 MiB (1%) 142471

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["Rimu", "Exact", "Diagonalization"]
  • ["Rimu", "Exact", "Multiplication"]
  • ["Rimu", "FCIQMC"]

Julia versioninfo

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.3 LTS
 uname: Linux 6.2.0-1016-azure #16~22.04.1-Ubuntu SMP Tue Oct 10 17:11:51 UTC 2023 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 2645 MHz 4717 s 0 s 200 s 11302 s 0 s
 #2 2445 MHz 4398 s 0 s 217 s 11616 s 0 s
 #3 2445 MHz 4534 s 0 s 226 s 11466 s 0 s
 #4 3242 MHz 2840 s 0 s 227 s 13141 s 0 s
 Memory: 15.60689926147461 GB (13833.453125 MB free)
 Uptime: 1627.25 sec
 Load Avg: 1.0 1.0 0.92
 WORD_SIZE: 64
 LIBM: libopenlibm
 LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
 Threads: 1 on 4 virtual cores

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Address sizes: 48 bits physical, 48 bits virtual
Byte Order: Little Endian
CPU(s): 4
On-line CPU(s) list: 0-3
Vendor ID: AuthenticAMD
Model name: AMD EPYC 7763 64-Core Processor
CPU family: 25
Model: 1
Thread(s) per core: 2
Core(s) per socket: 2
Socket(s): 1
Stepping: 1
BogoMIPS: 4890.85
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization: AMD-V
Hypervisor vendor: Microsoft
Virtualization type: full
L1d cache: 64 KiB (2 instances)
L1i cache: 64 KiB (2 instances)
L2 cache: 1 MiB (2 instances)
L3 cache: 32 MiB (1 instance)
NUMA node(s): 1
NUMA node0 CPU(s): 0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit: Not affected
Vulnerability L1tf: Not affected
Vulnerability Mds: Not affected
Vulnerability Meltdown: Not affected
Vulnerability Mmio stale data: Not affected
Vulnerability Retbleed: Not affected
Vulnerability Spec rstack overflow: Mitigation; safe RET, no microcode
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Not affected

Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@yangmr04 yangmr04 marked this pull request as ready for review December 1, 2023 17:07
mtsch
mtsch reviewed Dec 1, 2023
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Thanks! I found another error right next to one of the ones you fixed.

src/BitStringAddresses/bosefs.jl Outdated Show resolved Hide resolved
@joachimbrand @mtsch
Update src/BitStringAddresses/bosefs.jl
dcf3292 
Co-authored-by: mtsch <matijacufar@gmail.com>
joachimbrand
joachimbrand approved these changes Dec 1, 2023
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Thanks for this!

@yangmr04 yangmr04 merged commit 12b61c2 into develop Dec 1, 2023
5 checks passed
@joachimbrand joachimbrand deleted the doc/fix-bose-hubbard-inter-and-load-df branch December 2, 2023 00:01
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4 participants
@yangmr04 @coveralls @mtsch @joachimbrand