From 9bf53461c4e27693be3ec8a584dbb216cc14d530 Mon Sep 17 00:00:00 2001 From: jwildfire Date: Thu, 1 Mar 2018 11:27:03 -0800 Subject: [PATCH 01/19] partial example refactor. #81 --- .gitignore | 1 + .../package.json | 15 + package-lock.json | 3587 +++++++++++++++++ package.json | 13 +- scripts/buildExample/indexStub.html | 63 +- scripts/buildExample/makeExampleIndex.js | 2 +- scripts/parseExamples.js | 116 +- util/web/data/examples.js | 716 +--- 8 files changed, 3669 insertions(+), 844 deletions(-) create mode 100644 examples/0007-simple-barchart-webcharts/package.json create mode 100644 package-lock.json diff --git a/.gitignore b/.gitignore index afa3b67..fe97174 100644 --- a/.gitignore +++ b/.gitignore @@ -4,5 +4,6 @@ *.RData *.Ruserdata *.svn +*.DS_Store node_modules local diff --git a/examples/0007-simple-barchart-webcharts/package.json b/examples/0007-simple-barchart-webcharts/package.json new file mode 100644 index 0000000..1f91fd2 --- /dev/null +++ b/examples/0007-simple-barchart-webcharts/package.json @@ -0,0 +1,15 @@ +{ + "homepage":"./example.html", + "main": "simpleBarChart.js", + "name": "simple-barchart-webcharts", + "version": "1.0.0", + "description": "This is a simple bar chart showing counts of medals won by country at the 2012 summer Olympics. Made with Webcharts.", + "author": "Rho, Inc.", + "license": "MIT", + "keywords":["javascript","interactive","bar chart"], + "dependencies": { + "d3": "~3", + "webcharts":"~1" + }, + "dataDependecies":["./OlympicMedals2012.csv"] +} diff --git a/package-lock.json b/package-lock.json new file mode 100644 index 0000000..990f101 --- /dev/null +++ b/package-lock.json @@ -0,0 +1,3587 @@ +{ + "name": "viz-library", + "version": "0.6.0", + "lockfileVersion": 1, + "requires": true, + "dependencies": { + "abab": { + "version": "1.0.4", + "resolved": "https://registry.npmjs.org/abab/-/abab-1.0.4.tgz", + "integrity": "sha1-X6rZwsB/YN12dw9xzwJbYqY8/U4=", + "dev": true + }, + "acorn": { + "version": "5.5.0", + "resolved": "https://registry.npmjs.org/acorn/-/acorn-5.5.0.tgz", + "integrity": "sha512-arn53F07VXmls4o4pUhSzBa4fvaagPRe7AVZ8l7NHxFWUie2DsuFSBMMNAkgzRlOhEhzAnxeKyaWVzOH4xqp/g==", + "dev": true + }, + "acorn-globals": { + "version": "4.1.0", + "resolved": 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+ "xmlbuilder": "9.0.7" + } + }, + "xmlbuilder": { + "version": "9.0.7", + "resolved": "https://registry.npmjs.org/xmlbuilder/-/xmlbuilder-9.0.7.tgz", + "integrity": "sha1-Ey7mPS7FVlxVfiD0wi35rKaGsQ0=", + "dev": true + }, + "xtend": { + "version": "4.0.1", + "resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.1.tgz", + "integrity": "sha1-pcbVMr5lbiPbgg77lDofBJmNY68=", + "dev": true + } + } +} diff --git a/package.json b/package.json index d7aff6c..3a89057 100644 --- a/package.json +++ b/package.json @@ -4,12 +4,12 @@ "description": "Examples of statistical graphics created at Rho", "main": "./index.html", "scripts": { - "build":"npm run scrape-all && npm run build-web", + "build": "npm run scrape-all && npm run build-web", "build-web": "npm run format && rollup -c ./scripts/rollup.config.js | babel > ./util/web/build/vizLibrary.js", "format": "prettier --write \"./scripts/**/*.js\" && prettier --write \"./util/**/*.js\"", - "scrape-all":"npm run scrape-examples && npm run scrape-dataFiles", - "scrape-examples":"node ./scripts/parseExamples", - "scrape-dataFiles":"node ./scripts/buildDataList/parseDataFiles.js", + "scrape-all": "npm run scrape-examples && npm run scrape-dataFiles", + "scrape-examples": "node ./scripts/parseExamples", + "scrape-dataFiles": "node ./scripts/buildDataList/parseDataFiles.js", "test": "node ./testing/test.js" }, "author": "Rho, Inc.", @@ -19,11 +19,12 @@ }, "devDependencies": { "jimp": "^0.2.27", + "jsdom": "~11", "babel-cli": "^6.5.1", "babel-preset-es2015-rollup": "^1.1.1", "rollup": "^0.25.3", "rollup-plugin-babel": "^2.3.9", - "csvtojson":"~1", - "prettier":"~1" + "csvtojson": "~1", + "prettier": "~1" } } diff --git a/scripts/buildExample/indexStub.html b/scripts/buildExample/indexStub.html index a0c391f..34535e2 100644 --- a/scripts/buildExample/indexStub.html +++ b/scripts/buildExample/indexStub.html @@ -1,52 +1,29 @@ - + - - - - - -
- - 🏠 - - ✖ -

- -
-
-
- -
+
+ + + +
    +
  • + + +
      +
    +
    - diff --git a/scripts/buildExample/makeExampleIndex.js b/scripts/buildExample/makeExampleIndex.js index d07df19..8f51b9c 100644 --- a/scripts/buildExample/makeExampleIndex.js +++ b/scripts/buildExample/makeExampleIndex.js @@ -33,7 +33,7 @@ exports.makeExampleIndex = function(ex) { var fs = require("fs"), d3 = require("d3"), jsdom = require("jsdom"), - showdown = require("showdown"); + //showdown = require("showdown"); var stub = fs .readFileSync("./scripts/buildExample/indexStub.html") diff --git a/scripts/parseExamples.js b/scripts/parseExamples.js index 8405699..07a26b4 100644 --- a/scripts/parseExamples.js +++ b/scripts/parseExamples.js @@ -14,95 +14,62 @@ var examples = fs return { dir: f }; }); -//regex expressions to look for in readme -var chartAttributes = [ - { value: "title", regex: /^\*\*Title:\*\*/ }, - { value: "languages", regex: /^\*\*Languages:\*\*/ }, - { value: "libraries", regex: /^\*\*Libraries:\*\*/ }, - { value: "description", regex: /^\*\*Description:\*\*/ }, - { value: "data", regex: /^\*\*Data:\*\*/ }, - { value: "code", regex: /^\*\*Code:\*\*/ }, - { value: "results", regex: /^\*\*Results:\*\*/ }, - { value: "tags", regex: /^\*\*Tags:\*\*/ } -]; - +/* parse each example */ examples.forEach(function(ex) { - ////get list of files//// + /**************************** + *** File/path management + *****************************/ ex.files = fs.readdirSync(exampleRoot + "/" + ex.dir).filter(function(f) { return f.charAt(0) != "."; }); ////get paths of required files//// ex.paths = {}; + ex.paths.root = exampleRoot + "/" + ex.dir + "/"; //root path + ex.paths.index = "index.html"; + ex.paths.thumb = "thumb.png"; - //root path - ex.paths.root = exampleRoot + "/" + ex.dir + "/"; + /**************************** + *** Pull package.json into an object, do some error checking and create index.html + *****************************/ - //readme.md - var readmeN = ex.files + var packageN = ex.files .map(function(f) { return f.toLowerCase(); }) - .indexOf("readme.md"); - ex.paths.readme = readmeN > -1 ? ex.files[readmeN] : null; - - //index.html - ex.paths.index = "index.html"; - - //thumb.png - ex.paths.thumb = "thumb.png"; - - //get readme.md text - ex.readme = {}; + .indexOf("package.json"); - //Pull in the raw readme data and look for attributes - if (ex.paths.readme) { + ex.paths.package = packageN > -1 ? ex.files[packageN] : null; + if (ex.paths.package) { var lines = fs - .readFileSync(ex.paths.root + ex.paths.readme, "utf8") + .readFileSync(ex.paths.root + ex.paths.package, "utf8") .toString() - .split("\n"); - - //look for chart attributes in the readme - chartAttributes.forEach(function(c) { - var attrMatch = lines.filter(function(line) { - return c.regex.test(line); - }); - ex[c.value] = - attrMatch.length == 1 - ? attrMatch[0].match(/([^(**)]+$)/)[0].trim() - : null; - }); - - //parse langauges and libraries to arrays - ex.langages = ex.languages.split(",").map(d => d.trim()); - ex.libraries = ex.libraries.split(",").map(d => d.trim()); - } - - // - ////get paths of data and code//// - ex.paths.data = ex.data; - ex.paths.code = ex.code; - - //example - var webExampleN = ex.files - .map(function(f) { - return f.toLowerCase(); + ex.package = JSON.parse(lines) + + //make sure that required fields are found + var requiredProperties = ["homepage","main","name","version"] + requiredProperties.forEach(function(p){ + if(!ex.package[p]){ + console.error("ERROR: Can't create index.html "+ex.paths.root+" since `"+p+"` is missing in package.json." ) + return + } }) - .indexOf("example.html"); - var imgExampleN = ex.files - .map(function(f) { - return f.toLowerCase(); - }) - .indexOf("example.png"); + //make sure that main isn't set to index.html + if(ex.package["main"].toLowerCase() == "index.html"){ + console.error("ERROR: Can't create index.html "+ex.paths.root+" since `main` is set to index.html." ) + return + } - ex.paths.example = ex.results - ? ex.results - : webExampleN > -1 - ? ex.files[webExampleN] - : imgExampleN > -1 ? ex.files[imgExampleN] : null; + //create index.html for the example + makeindex.makeExampleIndex(ex) + }else{ + console.error("ERROR: Can't create index.html "+ex.paths.root+" since no package.json was found." ) + } - //Make thumbnails + /**************************** + *** Make thumbnails + *****************************/ var imgs = ex.files .map(function(f) { return f.toLowerCase(); @@ -128,15 +95,6 @@ examples.forEach(function(ex) { .write(thumbFile); // save }); } - - //Make example pages (unless readme says not to) - var makeIndexRegex = /(\[comment\]: <> \(---NO AUTO INDEX---\))/; - var makeIndexLines = lines.filter(function(line) { - return makeIndexRegex.test(line); - }); - ex.makeIndex = makeIndexLines.length == 0; - - if (ex.makeIndex) makeindex.makeExampleIndex(ex); }); //write examples to disk diff --git a/util/web/data/examples.js b/util/web/data/examples.js index cd1cfb9..1c0c160 100644 --- a/util/web/data/examples.js +++ b/util/web/data/examples.js @@ -1,715 +1 @@ -var examples = [ - { - dir: "0001-density-lattice", - files: [ - "0001-density-lattice.png", - "0001-density-lattice.R", - "0001-density-lattice_thumb.png", - "index.html", - "README.md", - "thumb.png" - ], - paths: { - root: "./examples/0001-density-lattice/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "../../data/ChickWeight.csv", - code: "0001-density-lattice.R", - example: "0001-density-lattice.png" - }, - readme: {}, - title: "Density Plot", - languages: "R", - libraries: ["lattice"], - description: - "Customized density plot created using lattice combining paneling, grouping, custom annotations and some simple data manipulation.", - data: "../../data/ChickWeight.csv", - code: "0001-density-lattice.R", - results: "0001-density-lattice.png", - tags: "density plot, lattice, r, groups, means, annotated, faceted", - langages: ["R"], - makeIndex: true - }, - { - dir: "0002-dotplot-ggplot", - files: [ - "0002-dotplot-ggplot.png", - "0002-dotplot-ggplot.R", - "index.html", - "README.md", - "thumb.png" - ], - paths: { - root: "./examples/0002-dotplot-ggplot/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "../../data/discrete_scores.csv", - code: "0002-dotplot-ggplot.R", - example: "0002-dotplot-ggplot.png" - }, - readme: {}, - title: "Stacked Dot Plot #1", - languages: "R", - libraries: ["ggplot2"], - description: - "Stacked dot plot created using ggplot2 combining paneling, custom annotations and some simple data manipulation.", - data: "../../data/discrete_scores.csv", - code: "0002-dotplot-ggplot.R", - results: "0002-dotplot-ggplot.png", - tags: - "dotplot, r, ggplot2, facet, median, highlight, stack points, discrete", - langages: ["R"], - makeIndex: true - }, - { - dir: "0003-dotplot-lattice", - files: [ - "0003-dotplot-lattice.png", - "0003-dotplot-lattice.R", - "0003-dotplot-lattice_tags.txt", - "index.html", - "README.md", - "thumb.png" - ], - paths: { - root: "./examples/0003-dotplot-lattice/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "../../data/discrete_scores.csv", - code: "0003-dotplot-lattice.R", - example: "0003-dotplot-lattice.png" - }, - readme: {}, - title: "Stacked Dot Plot #2", - languages: "R", - libraries: ["lattice"], - description: - 'Stacked dot plot created using ggplot2 combining paneling, custom annotations and simple data manipulation. Similar to this example made with lattice.', - data: "../../data/discrete_scores.csv", - code: "0003-dotplot-lattice.R", - results: "0003-dotplot-lattice.png", - tags: - "dotplot, r, lattice, facet, median, highlight, stack points, discrete", - langages: ["R"], - makeIndex: true - }, - { - dir: "0004-pirateplot-yarrr", - files: [ - "0004-pirateplot-yarrr.png", - "0004-pirateplot-yarrr.R", - "0004-pirateplot-yarrr_tags.txt", - "index.html", - "README.md", - "thumb.png" - ], - paths: { - root: "./examples/0004-pirateplot-yarrr/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: - "https://vincentarelbundock.github.io/Rdatasets/csv/datasets/chickwts.csv", - code: "0004-pirateplot-yarrr.R", - example: "0004-pirateplot-yarrr.png" - }, - readme: {}, - title: "Pirate plot using Yarrr", - languages: "R", - libraries: ["yarrr"], - description: - "Combines a box-and-whisker plot with overlaid density plots to show clear comparisons of distributions across groups; a good choice for displaying the relationship between 1 or two categorical independent variables, and one continuous dependent variable.", - data: - "https://vincentarelbundock.github.io/Rdatasets/csv/datasets/chickwts.csv", - code: "0004-pirateplot-yarrr.R", - results: "0004-pirateplot-yarrr.png", - tags: "pirateplot, boxplot, density plot, violin plot", - langages: ["R"], - makeIndex: true - }, - { - dir: "0005-unemploy-mvtsplot", - files: [ - "0005-unemploy-mvtsplot.png", - "0005-unemploy-mvtsplot.R", - "blsunemployment.csv", - "index.html", - "README.md", - "thumb.png" - ], - paths: { - root: "./examples/0005-unemploy-mvtsplot/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "Precipitations.csv", - code: "0005-unemploy-mvtsplot.R", - example: "0005-unemploy-mvtsplot.png" - }, - readme: {}, - title: "Unemployment Trends with a Multivariate Time Series", - languages: "R", - libraries: ["mvtsplot"], - description: - "Mutivariate time series plot using MVTSPLOT package and Unemployment data", - data: "Precipitations.csv", - code: "0005-unemploy-mvtsplot.R", - results: "0005-unemploy-mvtsplot.png", - tags: "multivariate, time series, heatmap, monthly", - langages: ["R"], - makeIndex: true - }, - { - dir: "0006-precip-levelplot-lattice", - files: [ - "0006-precip-levelplot-lattice.png", - "0006-precip-levelplot-lattice.R", - "index.html", - "Precipitations.csv", - "README.md", - "thumb.png" - ], - paths: { - root: "./examples/0006-precip-levelplot-lattice/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "blsunemployment.csv", - code: "0006-precip-levelplot-lattice.R", - example: "0006-precip-levelplot-lattice.png" - }, - readme: {}, - title: "Orderered Precipitation Heatmap", - languages: "R", - libraries: ["lattice"], - description: - "Heatmap with ordered columns and rows using monthly precipitation data", - data: "blsunemployment.csv", - code: "0006-precip-levelplot-lattice.R", - results: "0006-precip-levelplot-lattice.png", - tags: "Ordered, heatmap, annotation", - langages: ["R"], - makeIndex: true - }, - { - dir: "0007-simple-barchart-webcharts", - files: [ - "example.html", - "index.html", - "OlympicMedals2012.csv", - "README.md", - "simpleBarChart.js", - "thumb.png" - ], - paths: { - root: "./examples/0007-simple-barchart-webcharts/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "OlympicMedals2012.csv", - code: "simpleBarChart.js", - example: "example.html" - }, - readme: {}, - title: "Simple Interactive Bar Chart", - languages: "javascript", - libraries: ["webcharts"], - description: - "This is a simple bar chart showing counts of medals won by country at the 2012 summer Olympics. Made with Webcharts.", - data: "OlympicMedals2012.csv", - code: "simpleBarChart.js", - results: null, - tags: "interactive, bar chart", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0008-safetyExplorer-default", - files: [ - "ae-table", - "ae-timelines", - "chart.html", - "index.html", - "README.md", - "safety-histogram", - "safety-outlier-explorer", - "safety-results-over-time", - "safety-shift-plot", - "safetyExplorer.css", - "thumb.png", - "timeline.png" - ], - paths: { - root: "./examples/0008-safetyExplorer-default/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "../../data/safetyData/", - code: "ae-table/index.html", - example: "ae-table/index.html" - }, - readme: {}, - title: "Safety Explorer - Default Configuration", - languages: "javascript", - libraries: [ - "webcharts", - "safety-histogram", - "safety-results-over-time", - "safety-shift-plot", - "safety-outlier-explorer", - "ae-timeline", - "ae-explorer" - ], - description: - "The safety explorer is a collection of interactive graphics visualizing adverse event, lab, and vital sign data captured in clinical trials. 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This instance demonstrates customized versions of each graphic including added filters and/or highlights for query data.", - data: "../../data/safetyData-queries/", - code: "ae-table/index.html", - results: "ae-table/index.html", - tags: "interactive, webcharts, adverse events, safety explorer, queries", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0012-web-codebook-explorer", - files: [ - "example.html", - "GitHub-Mark-32px.png", - "index.html", - "README.md", - "screen.png", - "thumb.png" - ], - paths: { - root: "./examples/0012-web-codebook-explorer/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "../../data/safetyData/", - code: "example.html", - example: "example.html" - }, - readme: {}, - title: "Web Codebook Explorer", - languages: "javascript", - libraries: ["web-codebook"], - description: - "Demonstration of the web-based data summaries using web-codebook.", - data: "../../data/safetyData/", - code: "example.html", - results: "example.html", - tags: "interactive, codebook", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0013-query-overview", - files: [ - "example.html", - "GitHub-Mark-32px.png", - "index.html", - "README.md", - "screen.png", - "thumb.png", - "webCodebookExplorer.js" - ], - paths: { - root: "./examples/0013-query-overview/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "../../data/queries/queries.csv", - code: "example.html", - example: "example.html" - }, - readme: {}, - title: "Query Overview", - languages: "javascript", - libraries: ["query-overview"], - description: - "Explorer clinical trial query data using the query-overview library.", - data: "../../data/queries/queries.csv", - code: "example.html", - results: "example.html", - tags: "interactive, queries", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0015-safety-explorer-single-page", - files: [ - "example.html", - "index.html", - "README.md", - "Screenshot.png", - "thumb.png" - ], - paths: { - root: "./examples/0015-safety-explorer-single-page/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "../../data/safetyData-queries/", - code: "example.html", - example: "example.html" - }, - readme: {}, - title: "Safety Explorer Suite - Single Page", - languages: "javascript", - libraries: [ - "safety-explorer-suite", - "webcharts", - "safety-histogram", - "safety-results-over-time", - "safety-shift-plot", - "safety-outlier-explorer", - "ae-timeline", - "ae-explorer" - ], - description: - "Example of the safety explorer suite, a simple framework combining 6 interactive safety charts in to a single page.", - data: "../../data/safetyData-queries/", - code: "example.html", - results: "example.html", - tags: "interactive, queries", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0016-safety-outlier-explorer-hys-law", - files: [ - "example.html", - "hy.csv", - "index.html", - "README.md", - "screen.png", - "thumb.png" - ], - paths: { - root: "./examples/0016-safety-outlier-explorer-hys-law/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "hy.csv", - code: "example.html", - example: "example.html" - }, - readme: {}, - title: "Safety Outlier Explorer - Hy's Law", - languages: "javascript", - libraries: ["webcharts", "safety-outlier-explorer"], - description: - "Example of the safety outlier explorer chart for a small mock study where a single participant meets the criteria for Hy's law.", - data: "hy.csv", - code: "example.html", - results: "example.html", - tags: "interactive, queries", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0017-population-explorer", - files: [ - "example.html", - "index.html", - "primary_outcome_determination_24NOV.csv", - "README.md", - "screen.png", - "thumb.png" - ], - paths: { - root: "./examples/0017-population-explorer/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "primary_outcome_determination_24NOV.csv", - code: "example.html", - example: "example.html" - }, - readme: {}, - title: "Population Explorer for LEAP and LEAP-ON", - languages: "javascript", - libraries: ["population explorer"], - description: - "Example of the population explorer graphic using public data from the LEAP and LEAP-on Clinical Trials.", - data: "primary_outcome_determination_24NOV.csv", - code: "example.html", - results: "example.html", - tags: "interactive, data explorer", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0018-scatter-plot-matrix", - files: [ - "example.html", - "index.html", - "index.js", - "README.md", - "scatterPlotMatrix.js", - "screen.png", - "thumb.png" - ], - paths: { - root: "./examples/0018-scatter-plot-matrix/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: - "../../data/iris.csv, ../../data/safetyData/VS.csv, ../0016-safety-outlier-explorer-hys-law/hy.csv", - code: "index.js", - example: "example.html" - }, - readme: {}, - title: "Interactive Scatter Plot Lattice with Vital Signs Data", - languages: "javascript", - libraries: ["scatterPlotMatrix"], - description: - "A paneled series of scatter plots plotting every measure against every other measure", - data: - "../../data/iris.csv, ../../data/safetyData/VS.csv, ../0016-safety-outlier-explorer-hys-law/hy.csv", - code: "index.js", - results: "example.html", - tags: "interactive, scatter plot, lattice, matrix, bivariate", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0019-paneled-outlier-explorer", - files: [ - "example.html", - "index.html", - "README.md", - "screen.png", - "thumb.png" - ], - paths: { - root: "./examples/0019-paneled-outlier-explorer/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "../../data/safetyData/ADBDS.csv", - code: "example.html", - example: "example.html" - }, - readme: {}, - title: "Brushable paneled outlier explorer", - languages: "javascript", - libraries: ["webCharts"], - description: - "Example of the a brushable paneled outlier explorer that allows brushing of lines and points", - data: "../../data/safetyData/ADBDS.csv", - code: "example.html", - results: "example.html", - tags: "interactive, outlier explorer, brushable, paneled", - langages: ["javascript"], - makeIndex: true - }, - { - dir: "0020-webcharts-table", - files: [ - "example.html", - "index.html", - "README.md", - "Screen Shot 2017-09-19 at 8.12.29 AM.png", - "simpleTable.js", - "thumb.png", - "xlsx.full.min.js" - ], - paths: { - root: "./examples/0020-webcharts-table/", - readme: "README.md", - index: "index.html", - thumb: "thumb.png", - data: "elements.csv", - code: "simpleTable.js", - example: "example.html" - }, - readme: {}, - title: "Webcharts Table", - languages: "javascript", - libraries: ["webcharts"], - description: - "This is a simple listing of elemental data. 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Shot 2017-09-19 at 8.12.29 AM.png","example.html","index.html","simpleTable.js","thumb.png","xlsx.full.min.js"],"paths":{"root":"./examples/0020-webcharts-table/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0021-webcharts-destroy-table","files":["README.md","Screen Shot 2017-09-21 at 8.25.55 AM.png","example.html","index.html","thumb.png"],"paths":{"root":"./examples/0021-webcharts-destroy-table/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0022-clinical-timelines","files":["GitHub-Mark-32px.png","README.md","example.html","index.html","screen.png","thumb.png"],"paths":{"root":"./examples/0022-clinical-timelines/","index":"index.html","thumb":"thumb.png","package":null}}] \ No newline at end of file From ae81f4baecf94b7048c31e8e26f7e4944ebe7e04 Mon Sep 17 00:00:00 2001 From: jwildfire Date: Sun, 4 Mar 2018 02:20:26 -0800 Subject: [PATCH 02/19] basic refactor infrastructure complete. #81 --- .../example.html | 5 +- .../0007-simple-barchart-webcharts/index.html | 81 +++---- .../package.json | 5 +- .../simpleBarChart.js | 2 +- scripts/buildExample/exampleHeaderStub.html | 28 +++ scripts/buildExample/indexStub.html | 20 -- scripts/buildExample/makeExampleIndex.js | 217 ++++++------------ util/web/css/examples.css | 137 +++++------ util/web/css/viz-library.css | 12 + util/web/data/examples.js | 2 +- 10 files changed, 215 insertions(+), 294 deletions(-) create mode 100644 scripts/buildExample/exampleHeaderStub.html diff --git a/examples/0007-simple-barchart-webcharts/example.html b/examples/0007-simple-barchart-webcharts/example.html index c7f1126..72d3a39 100644 --- a/examples/0007-simple-barchart-webcharts/example.html +++ b/examples/0007-simple-barchart-webcharts/example.html @@ -8,7 +8,8 @@ - + +
    - \ No newline at end of file + diff --git a/examples/0007-simple-barchart-webcharts/index.html b/examples/0007-simple-barchart-webcharts/index.html index af537e9..c42e6f8 100644 --- a/examples/0007-simple-barchart-webcharts/index.html +++ b/examples/0007-simple-barchart-webcharts/index.html @@ -1,52 +1,43 @@ - - Simple Interactive Bar Chart - - - - - - - +Webcharts - Simple Bar Chart + - -
    - - 🏠 - - ✖ -

    Simple Interactive Bar Chart

    - -
    This is a simple bar chart showing counts of medals won by country at the 2012 summer Olympics. Made with Webcharts.View README.md.
    -
    -
    - -
    -
    + - + + + +
    + +
      +
      • +
    • Graphics
      • +
    • Example
      • +
    • Simple Barchart Webcharts
      • +
    • ⓘ
      • +
    + + +
    - d3.select(".viz-example-details .close").on("click",function(){ - d3.select(".viz-example-details").classed("hidden",true) - }) +
    - d3.select(".expandDetails").on("click",function(){ - d3.select(".viz-example-details").classed("hidden",false) - }) - + \ No newline at end of file diff --git a/examples/0007-simple-barchart-webcharts/package.json b/examples/0007-simple-barchart-webcharts/package.json index 1f91fd2..32db349 100644 --- a/examples/0007-simple-barchart-webcharts/package.json +++ b/examples/0007-simple-barchart-webcharts/package.json @@ -1,7 +1,8 @@ { - "homepage":"./example.html", + "homepage":"example.html", "main": "simpleBarChart.js", "name": "simple-barchart-webcharts", + "label":"Simple Barchart (webcharts)", "version": "1.0.0", "description": "This is a simple bar chart showing counts of medals won by country at the 2012 summer Olympics. Made with Webcharts.", "author": "Rho, Inc.", @@ -11,5 +12,5 @@ "d3": "~3", "webcharts":"~1" }, - "dataDependecies":["./OlympicMedals2012.csv"] + "dataDependecies":["OlympicMedals2012.csv"] } diff --git a/examples/0007-simple-barchart-webcharts/simpleBarChart.js b/examples/0007-simple-barchart-webcharts/simpleBarChart.js index 54a148a..f986265 100644 --- a/examples/0007-simple-barchart-webcharts/simpleBarChart.js +++ b/examples/0007-simple-barchart-webcharts/simpleBarChart.js @@ -21,7 +21,7 @@ var settings = { gridlines: "x" }; -var medalChart = webCharts.createChart("body", settings); +var medalChart = webCharts.createChart(".chart", settings); d3.csv("OlympicMedals2012.csv", function(error, data) { //just keep the countries with the 10 most medals diff --git a/scripts/buildExample/exampleHeaderStub.html b/scripts/buildExample/exampleHeaderStub.html new file mode 100644 index 0000000..610c17e --- /dev/null +++ b/scripts/buildExample/exampleHeaderStub.html @@ -0,0 +1,28 @@ +
    + + + + +
    diff --git a/scripts/buildExample/indexStub.html b/scripts/buildExample/indexStub.html index 34535e2..825e32c 100644 --- a/scripts/buildExample/indexStub.html +++ b/scripts/buildExample/indexStub.html @@ -3,27 +3,7 @@ - -
    - - - -
      -
    • - - -
        -
        • -
      diff --git a/scripts/buildExample/makeExampleIndex.js b/scripts/buildExample/makeExampleIndex.js index 8f51b9c..7ad3ee1 100644 --- a/scripts/buildExample/makeExampleIndex.js +++ b/scripts/buildExample/makeExampleIndex.js @@ -1,153 +1,88 @@ /* - -Create an index.html file for a given example +This function create an index.html file for a given example Input: an Example Object created by parseExamples.js Output: an index.html file saved in the example folder - */ -/* -var exampleRoot = "./examples" -var sampleExample = { - "dir":"0007-simple-barchart-webcharts", - "files":[ - "OlympicMedals2012.csv", - "README.md", - "example.html", - "simpleBarChart.js", - "thumb.png", - "thumbnail.png" - ], - "readme":{"index":1,"path":"./examples/0007-simple-barchart-webcharts/README.md"}, - "code":{"path":"./examples/0007-simple-barchart-webcharts/simpleBarChart.js"}, - "index":{"path":"./examples/0007-simple-barchart-webcharts/index.html"}, - "title":"Simple Interactive Bar Chart", - "languages":"javascript", - "libraries":"webcharts", - "description":"This is a simple bar chart showing counts of medals won by country at the 2012 summer Olympics. Made with Webcharts.", - "tags":"interactive, bar chart", - "data":"OlympicMedals2012.csv" -}*/ - exports.makeExampleIndex = function(ex) { var fs = require("fs"), - d3 = require("d3"), - jsdom = require("jsdom"), - //showdown = require("showdown"); - - var stub = fs - .readFileSync("./scripts/buildExample/indexStub.html") - .toString(); - var readme = fs - .readFileSync(ex.paths.root + "/" + ex.paths.readme) - .toString(); - var code = fs.readFileSync(ex.paths.root + "/" + ex.paths.code).toString(); - - // pass the html stub to jsDom - // via https://mango-is.com/blog/engineering/pre-render-d3-js-charts-at-server-side/ - // and https://bl.ocks.org/tomgp/c99a699587b5c5465228 - - jsdom.env({ - html: stub, - features: { QuerySelector: true }, //you need query selector for D3 to work - done: function(err, window) { - window.d3 = d3.select(window.document); //get d3 into the dom - - // page header - window.document.title = ex.title; - - // Add the header - parse the README.md header - var header = window.d3.select(".viz-example-header"); - header.select("h1").text(ex.title); - header.select("div.description").text(ex.description); - - // Add the details - //add sections - var detailVars = [ - "languages", - "libraries", - "tags", - "data", - "results", - "code" - ]; + d3 = require("d3"); + + /**************************************** + *** Load placeholder files + *****************************************/ + var stub = fs + .readFileSync("./scripts/buildExample/indexStub.html") + .toString(); + + var exampleHeaderStub = fs + .readFileSync("./scripts/buildExample/exampleHeaderStub.html") + .toString(); + + /**************************************** + *** Combine the header and the vizualization + *****************************************/ + var exampleExt = ex.package.homepage.split(".").pop(); + console.log(exampleExt.slice(0)) + if (["jpeg","jpg","png"].indexOf(exampleExt.slice(0))>-1){ + //If the visualization is an image, use the stub html as the base for the index page + ex.index = stub + } else if (["html","htm"].indexOf(exampleExt.slice(0))>-1){ + //If the visualization is a webpage, use it as the base for the index page + ex.index = fs + .readFileSync(ex.paths.root + ex.package.homepage) + .toString(); - var detailInfo = header - .select("ul.tags") - .selectAll("li") - .data(detailVars) - .enter() - .append("li"); - - //via http://stackoverflow.com/questions/1026069/how-do-i-make-the-first-letter-of-a-string-uppercase-in-javascript - function capitalizeFirstLetter(string) { - return string.charAt(0).toUpperCase() + string.slice(1); - } - - detailInfo - .append("span") - .attr("class", "label") - .html(d => capitalizeFirstLetter(d) + " ") - .style("font-size", "0.7em") - .style("color", "#aaa") - .attr("padding-right", "0.2em"); - - detailInfo - .append("span") - .html( - d => - d == "data" || d == "results" || d == "code" - ? "" + ex[d] + "" - : ex[d] - ); - - // parse any extra readme content - var detailRegex = /(\[comment\]: <> \(---END OF HEADER---\))[\s\S]*$/; - var detailContent_markdown = readme.match(detailRegex)[0]; - var converter = new showdown.Converter(); - ex.details = converter.makeHtml(detailContent_markdown); - var details = window.d3 - .select(".viz-example-details .detail-content") - .html(ex.details); - if (ex.details) { - header - .select("div.description") - .append("a") - .attr("class", "expandDetails") - .text("View README.md."); - } - - // Show the example - var webExampleContent = - ''; - var staticExampleContent = - '
      '; - var exampleExt = ex.paths.example.split(".").pop(); - var exampleContent_html = - exampleExt == "html" ? webExampleContent : staticExampleContent; - - window.d3 - .select("body") - .style("overflow-y", exampleExt == "html" ? "hidden" : null); + } + //console.log(ex.index) + + // add the headerstub immediately after the tag + var insertionPoint = ex.index.search("")+6 + ex.index = ex.index.slice(0,insertionPoint) + exampleHeaderStub + ex.index.slice(insertionPoint) + /**************************************** + *** Add example meta data to the header using JSDOM + *****************************************/ + // pass the html stub to jsDom + // via https://mango-is.com/blog/engineering/pre-render-d3-js-charts-at-server-side/ + // and https://bl.ocks.org/tomgp/c99a699587b5c5465228 + + const jsdom = require("jsdom"); + const { JSDOM } = jsdom; + const dom = new JSDOM(ex.index,{ runScripts: "dangerously" }); + dom.window.d3 = d3.select(dom.window.document); + + //Add meta data about the chart to the header + function toTitleCase(str){ + return str.replace(/\w\S*/g, function(txt){return txt.charAt(0).toUpperCase() + txt.substr(1).toLowerCase();}); + } + var cleanName = toTitleCase(ex.package.name.replace(/-/g," ")) + var header = dom.window.d3.select(".vl-ex-header"); + header.select("li.title").html(cleanName) - window.d3.select(".viz-example-chart").html(exampleContent_html); + //Add details about the chart + var details = dom.window.d3.select("div#vl-ex-details"); - /* - // Show the code - parse the code file. - window.d3.select("code").text(code); - */ - //write the index file - console.log("Created example for : " + ex.dir); - fs.writeFileSync( - ex.paths.root + "/" + ex.paths.index, - window.document.documentElement.outerHTML - ); + if(ex.package.dataDependecies.length > 0){ + details.select("li a.vl-ex-data").property("href",ex.package.dataDependecies[0]) + }else{ + details.select("li a.vl-ex-data").remove() } - }); -}; -//makeExampleIndex(sampleExample) + details.select("li a.vl-ex-code").property("href",ex.package.main) + details.select("p.vl-ex-description").html(""+cleanName+" - "+ex.package.description) + details.select("ul.vl-ex-tags").selectAll("li.tag").data(ex.package.keywords) + .enter() + .append("li") + .attr("class","tag") + .text(d=>d) + + console.log(dom.window.document.querySelector("body").outerHTML); // "Hello world" + /***************************************** + *** Output index.html + *****************************************/ + console.log("Created example for : " + ex.dir); + fs.writeFileSync( + ex.paths.root + "/" + ex.paths.index, + dom.window.document.documentElement.outerHTML + ); +}; diff --git a/util/web/css/examples.css b/util/web/css/examples.css index a59b11d..68a7bd4 100644 --- a/util/web/css/examples.css +++ b/util/web/css/examples.css @@ -1,108 +1,81 @@ -.hidden{ - display:none; -} - -body{ - margin:0; - padding:0; -} -.viz-example-header, .viz-example-body{ - padding: 0 1% 0 1%; +/***************************** +** Page header +******************************/ +ul.vl-ex-header { + list-style-type: none; + overflow: hidden; + padding:0; + margin-bottom:0.3em; +} + +ul.vl-ex-header li { + float: left; + height:2.5em; + line-height: 2.5em; + text-align: center; + vertical-align:middle; + font-size:1.1em; } -.viz-example-chart{ - padding: .5% 0 .5% 0 +ul.vl-ex-header li.crumb:after { + padding: 0 0.2em 0 0.2em; + content: ":"; } -div.viz-example-header{ - background: #eee; - border-bottom: 2px solid black; - opacity:0.8; +ul.vl-ex-header li.site a{ + text-decoration: none; + font-weight:bold; + color:black; } - -div.viz-example-header{ - width: 98%; /* Full width */ - height:15%; - overflow-y: scroll; +ul.vl-ex-header li.icon { + vertical-align:middle; + display:inline-block; + padding-left:0; } -.viz-example-header .head{ - height:15% +ul.vl-ex-header li.icon img{ + padding:8; + height:24; + width:24; } -div.viz-example-body{ - height:84%; - width:98%; +ul.vl-ex-header li.info{ + cursor:pointer; + padding-left:0.2em; } -iframe{ - width:98%; - height:98%; -} +/***************************** +** Example Data +******************************/ -div.viz-example-header .home{ - position:absolute; - right:3em; - top:0; +div#vl-ex-details{ + background:#ccc; + border:1px solid #999; + border-radius:.3em; + padding:0.5em; } -span.close{ - position:absolute; - right:1em; - top:2px; - padding:1px; - border:1px solid black; - border-radius: 2px; - width:12px; - height:12px; - font-size:12px; - text-align: center; - vertical-align:middle; - cursor:pointer; -} +p.vl-ex-description{ + margin:0 0 0.3em 0; -div.viz-example-header h1{ - margin:0; - padding:0.1em 0 0.1em 0; } -div.viz-example-header ul.tags { +ul.vl-ex-tags{ margin:0; - padding: 0 0 0.5em 0; + padding:0; } -div.viz-example-header ul.tags li{ +ul.vl-ex-tags li{ display:inline-block; - padding-right:0.5em; -} - -body div.viz-example-header.section a.expandDetails{ - text-decoration:underline; - text-decoration-style: dotted; - color:#999; - cursor:pointer; - padding-left:.3em; -} - -div.viz-example-chart iframe{ - border-width: 0; -} - -div.viz-example-details{ - width:80%; - position:absolute; - left:0; - top:0; - margin:10%; - padding:0 1em 0 1em; - border:1px solid black; - border-radius:0.5em; - background: #eee; - opacity:0.98; + padding: 0.3em 0.5em; + margin:0 0.3em 0 0; + border-radius:0.3em; + border:2px solid black; + background:white; } -div.viz-example-details .wrap{ - position:relative; +ul.vl-ex-tags li.tag{ +background:#ffeda0; } diff --git a/util/web/css/viz-library.css b/util/web/css/viz-library.css index 310a450..0a269d3 100644 --- a/util/web/css/viz-library.css +++ b/util/web/css/viz-library.css @@ -112,6 +112,18 @@ ul.nav-tabs li.active a, ul.nav-tabs li.active:hover a{ color:black; } +ul.nav-tabs li.title{ + background-color:white; + border:0px; + padding-bottom:4px; + #font-size:18px; + vertical-align: middle; +} + +ul.nav-tabs li.title img{ + height:20; + width:20; +} /* Sections */ .section div.instructions { font-size:0.8em; diff --git a/util/web/data/examples.js b/util/web/data/examples.js index 1c0c160..52f218c 100644 --- a/util/web/data/examples.js +++ b/util/web/data/examples.js @@ -1 +1 @@ -var examples =[{"dir":"0001-density-lattice","files":["0001-density-lattice.R","0001-density-lattice.png","0001-density-lattice_thumb.png","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0001-density-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0002-dotplot-ggplot","files":["0002-dotplot-ggplot.R","0002-dotplot-ggplot.png","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0002-dotplot-ggplot/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0003-dotplot-lattice","files":["0003-dotplot-lattice.R","0003-dotplot-lattice.png","0003-dotplot-lattice_tags.txt","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0003-dotplot-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0004-pirateplot-yarrr","files":["0004-pirateplot-yarrr.R","0004-pirateplot-yarrr.png","0004-pirateplot-yarrr_tags.txt","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0004-pirateplot-yarrr/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0005-unemploy-mvtsplot","files":["0005-unemploy-mvtsplot.R","0005-unemploy-mvtsplot.png","README.md","blsunemployment.csv","index.html","thumb.png"],"paths":{"root":"./examples/0005-unemploy-mvtsplot/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0006-precip-levelplot-lattice","files":["0006-precip-levelplot-lattice.R","0006-precip-levelplot-lattice.png","Precipitations.csv","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0006-precip-levelplot-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0007-simple-barchart-webcharts","files":["OlympicMedals2012.csv","README.md","example.html","index.html","package.json","simpleBarChart.js","thumb.png"],"paths":{"root":"./examples/0007-simple-barchart-webcharts/","index":"index.html","thumb":"thumb.png","package":"package.json"},"package":{"homepage":"./example.html","main":"simpleBarChart.js","name":"simple-barchart-webcharts","version":"1.0.0","description":"This is a simple bar chart showing counts of medals won by country at the 2012 summer Olympics. 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=[{"dir":"0001-density-lattice","files":["0001-density-lattice.R","0001-density-lattice.png","0001-density-lattice_thumb.png","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0001-density-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0002-dotplot-ggplot","files":["0002-dotplot-ggplot.R","0002-dotplot-ggplot.png","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0002-dotplot-ggplot/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0003-dotplot-lattice","files":["0003-dotplot-lattice.R","0003-dotplot-lattice.png","0003-dotplot-lattice_tags.txt","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0003-dotplot-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0004-pirateplot-yarrr","files":["0004-pirateplot-yarrr.R","0004-pirateplot-yarrr.png","0004-pirateplot-yarrr_tags.txt","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0004-pirateplot-yarrr/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0005-unemploy-mvtsplot","files":["0005-unemploy-mvtsplot.R","0005-unemploy-mvtsplot.png","README.md","blsunemployment.csv","index.html","thumb.png"],"paths":{"root":"./examples/0005-unemploy-mvtsplot/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0006-precip-levelplot-lattice","files":["0006-precip-levelplot-lattice.R","0006-precip-levelplot-lattice.png","Precipitations.csv","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0006-precip-levelplot-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0007-simple-barchart-webcharts","files":["OlympicMedals2012.csv","README.md","example.html","index.html","package.json","simpleBarChart.js","thumb.png"],"paths":{"root":"./examples/0007-simple-barchart-webcharts/","index":"index.html","thumb":"thumb.png","package":"package.json"},"package":{"homepage":"example.html","main":"simpleBarChart.js","name":"simple-barchart-webcharts","version":"1.0.0","description":"This 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      \n \n \n
      \n

      \n\n \n
      \n \n
      \n\n
      \n\n\n\n"},{"dir":"0008-safetyExplorer-default","files":["README.md","ae-table","ae-timelines","chart.html","index.html","safety-histogram","safety-outlier-explorer","safety-results-over-time","safety-shift-plot","safetyExplorer.css","thumb.png","timeline.png"],"paths":{"root":"./examples/0008-safetyExplorer-default/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0009-web-codebook-demo","files":["GitHub-Mark-32px.png","README.md","example.html","index.html","screen.png","thumb.png","webCodebookDemo.js"],"paths":{"root":"./examples/0009-web-codebook-demo/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0010-spike-histogram","files":["README.md","example.html","index.html","paneledSpikeHistogram.js","spikeHistogram.js","thumb.png"],"paths":{"root":"./examples/0010-spike-histogram/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0011-safetyExplorer-queries","files":["README.md","ae-table","ae-timelines","chart.html","index.html","safety-histogram","safety-outlier-explorer","safety-results-over-time","safety-shift-plot","safetyExplorer.css","screenshot.png","thumb.png"],"paths":{"root":"./examples/0011-safetyExplorer-queries/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0012-web-codebook-explorer","files":["GitHub-Mark-32px.png","README.md","example.html","index.html","screen.png","thumb.png"],"paths":{"root":"./examples/0012-web-codebook-explorer/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0013-query-overview","files":["GitHub-Mark-32px.png","README.md","example.html","index.html","screen.png","thumb.png","webCodebookExplorer.js"],"paths":{"root":"./examples/0013-query-overview/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0015-safety-explorer-single-page","files":["README.md","Screenshot.png","example.html","index.html","thumb.png"],"paths":{"root":"./examples/0015-safety-explorer-single-page/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0016-safety-outlier-explorer-hys-law","files":["README.md","example.html","hy.csv","index.html","screen.png","thumb.png"],"paths":{"root":"./examples/0016-safety-outlier-explorer-hys-law/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0017-population-explorer","files":["README.md","example.html","index.html","primary_outcome_determination_24NOV.csv","screen.png","thumb.png"],"paths":{"root":"./examples/0017-population-explorer/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0018-scatter-plot-matrix","files":["README.md","example.html","index.html","index.js","scatterPlotMatrix.js","screen.png","thumb.png"],"paths":{"root":"./examples/0018-scatter-plot-matrix/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0019-paneled-outlier-explorer","files":["README.md","example.html","index.html","screen.png","thumb.png"],"paths":{"root":"./examples/0019-paneled-outlier-explorer/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0020-webcharts-table","files":["README.md","Screen Shot 2017-09-19 at 8.12.29 AM.png","example.html","index.html","simpleTable.js","thumb.png","xlsx.full.min.js"],"paths":{"root":"./examples/0020-webcharts-table/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0021-webcharts-destroy-table","files":["README.md","Screen Shot 2017-09-21 at 8.25.55 AM.png","example.html","index.html","thumb.png"],"paths":{"root":"./examples/0021-webcharts-destroy-table/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0022-clinical-timelines","files":["GitHub-Mark-32px.png","README.md","example.html","index.html","screen.png","thumb.png"],"paths":{"root":"./examples/0022-clinical-timelines/","index":"index.html","thumb":"thumb.png","package":null}}] \ No newline at end of file From f4fbedb4e7d52314523bf0e6631694e605a91853 Mon Sep 17 00:00:00 2001 From: jwildfire Date: Sun, 4 Mar 2018 03:09:42 -0800 Subject: [PATCH 03/19] add dependency tags. fix #82 --- .../0007-simple-barchart-webcharts/index.html | 6 +- .../package.json | 2 +- examples/0009-web-codebook-demo/README.md | 17 -- examples/0009-web-codebook-demo/index.html | 85 +++--- examples/0009-web-codebook-demo/package.json | 17 ++ scripts/buildExample/makeExampleIndex.js | 193 ++++++++----- scripts/parseExamples.js | 56 ++-- util/web/build/vizLibrary.js | 4 +- util/web/css/examples.css | 13 +- util/web/data/dataFiles.js | 259 ++++++++++-------- util/web/data/examples.js | 2 +- util/web/src/buildGistList.js | 6 +- util/web/src/buildPubList.js | 15 +- util/web/src/dataPreview.js | 42 +-- 14 files changed, 414 insertions(+), 303 deletions(-) delete mode 100644 examples/0009-web-codebook-demo/README.md create mode 100644 examples/0009-web-codebook-demo/package.json diff --git a/examples/0007-simple-barchart-webcharts/index.html b/examples/0007-simple-barchart-webcharts/index.html index c42e6f8..b5f6d8f 100644 --- a/examples/0007-simple-barchart-webcharts/index.html +++ b/examples/0007-simple-barchart-webcharts/index.html @@ -13,16 +13,16 @@
    • Graphics
    • Example
      • -
    • Simple Barchart Webcharts
      • +
    • Simple Barchart (Webcharts)
    • ⓘ
      • - - - +Web Codebook - demo + + + + + + + + + - -
      - - 🏠 - - ✖ -

      Web Codebook Demo

      - -
      Demonstration of the web-based data summaries using web-codebook.
      -
      -
      - -
      -
      +
      + +
        +
        • +
      • Graphics
        • +
      • Example
        • +
      • Web Codebook Demo
        • +
      • ⓘ
        • +
      + - /*show/hide events*/ - d3.select(".viz-example-header .close").on("click",function(){ - d3.select(".viz-example-header").classed("hidden",true) - d3.select(".viz-example-details").classed("hidden",true) - d3.select(".viz-example-body").style("height","100%") - }) +
      +
      +
      - d3.select(".viz-example-details .close").on("click",function(){ - d3.select(".viz-example-details").classed("hidden",true) - }) - d3.select(".expandDetails").on("click",function(){ - d3.select(".viz-example-details").classed("hidden",false) - }) - + \ No newline at end of file diff --git a/examples/0009-web-codebook-demo/package.json b/examples/0009-web-codebook-demo/package.json new file mode 100644 index 0000000..c6a08a1 --- /dev/null +++ b/examples/0009-web-codebook-demo/package.json @@ -0,0 +1,17 @@ +{ + "homepage":"example.html", + "main": "webCodebookDemo.js", + "name": "web-codebook-demo", + "label":"Web Codebook Demo", + "version": "1.0.0", + "description": "This page provides a simple demonstration of the web-codebook data summary tool.", + "author": "Rho, Inc.", + "license": "MIT", + "keywords":["javascript","interactive","codebook","data summary"], + "dependencies": { + "d3": "~3", + "webcharts":"~1", + "web-codebook":"~1" + }, + "dataDependecies":["../../data/safetyData/ADAE.csv"] +} diff --git a/scripts/buildExample/makeExampleIndex.js b/scripts/buildExample/makeExampleIndex.js index 7ad3ee1..1f9c5c4 100644 --- a/scripts/buildExample/makeExampleIndex.js +++ b/scripts/buildExample/makeExampleIndex.js @@ -8,81 +8,128 @@ exports.makeExampleIndex = function(ex) { var fs = require("fs"), d3 = require("d3"); - /**************************************** - *** Load placeholder files - *****************************************/ - var stub = fs - .readFileSync("./scripts/buildExample/indexStub.html") - .toString(); - - var exampleHeaderStub = fs - .readFileSync("./scripts/buildExample/exampleHeaderStub.html") - .toString(); - - /**************************************** - *** Combine the header and the vizualization - *****************************************/ - var exampleExt = ex.package.homepage.split(".").pop(); - console.log(exampleExt.slice(0)) - if (["jpeg","jpg","png"].indexOf(exampleExt.slice(0))>-1){ + /**************************************** + *** Load placeholder files + *****************************************/ + var stub = fs + .readFileSync("./scripts/buildExample/indexStub.html") + .toString(); + + var exampleHeaderStub = fs + .readFileSync("./scripts/buildExample/exampleHeaderStub.html") + .toString(); + + /**************************************** + *** Combine the header and the vizualization + *****************************************/ + var exampleExt = ex.package.homepage.split(".").pop(); + console.log(exampleExt.slice(0)); + if (["jpeg", "jpg", "png"].indexOf(exampleExt.slice(0)) > -1) { //If the visualization is an image, use the stub html as the base for the index page - ex.index = stub - } else if (["html","htm"].indexOf(exampleExt.slice(0))>-1){ + ex.index = stub; + } else if (["html", "htm"].indexOf(exampleExt.slice(0)) > -1) { //If the visualization is a webpage, use it as the base for the index page - ex.index = fs - .readFileSync(ex.paths.root + ex.package.homepage) - .toString(); - - } - //console.log(ex.index) - - // add the headerstub immediately after the tag - var insertionPoint = ex.index.search("")+6 - ex.index = ex.index.slice(0,insertionPoint) + exampleHeaderStub + ex.index.slice(insertionPoint) - /**************************************** - *** Add example meta data to the header using JSDOM - *****************************************/ - // pass the html stub to jsDom - // via https://mango-is.com/blog/engineering/pre-render-d3-js-charts-at-server-side/ - // and https://bl.ocks.org/tomgp/c99a699587b5c5465228 - - const jsdom = require("jsdom"); - const { JSDOM } = jsdom; - const dom = new JSDOM(ex.index,{ runScripts: "dangerously" }); - dom.window.d3 = d3.select(dom.window.document); - - //Add meta data about the chart to the header - function toTitleCase(str){ - return str.replace(/\w\S*/g, function(txt){return txt.charAt(0).toUpperCase() + txt.substr(1).toLowerCase();}); - } - var cleanName = toTitleCase(ex.package.name.replace(/-/g," ")) - var header = dom.window.d3.select(".vl-ex-header"); - header.select("li.title").html(cleanName) - - //Add details about the chart - var details = dom.window.d3.select("div#vl-ex-details"); - - if(ex.package.dataDependecies.length > 0){ - details.select("li a.vl-ex-data").property("href",ex.package.dataDependecies[0]) - }else{ - details.select("li a.vl-ex-data").remove() - } - - details.select("li a.vl-ex-code").property("href",ex.package.main) - details.select("p.vl-ex-description").html(""+cleanName+" - "+ex.package.description) - details.select("ul.vl-ex-tags").selectAll("li.tag").data(ex.package.keywords) + ex.index = fs.readFileSync(ex.paths.root + ex.package.homepage).toString(); + } + //console.log(ex.index) + + // add the headerstub immediately after the tag + var insertionPoint = ex.index.search("") + 6; + ex.index = + ex.index.slice(0, insertionPoint) + + exampleHeaderStub + + ex.index.slice(insertionPoint); + /**************************************** + *** Add example meta data to the header using JSDOM + *****************************************/ + // pass the html stub to jsDom + // via https://mango-is.com/blog/engineering/pre-render-d3-js-charts-at-server-side/ + // and https://bl.ocks.org/tomgp/c99a699587b5c5465228 + + const jsdom = require("jsdom"); + const { JSDOM } = jsdom; + const dom = new JSDOM(ex.index, { runScripts: "dangerously" }); + dom.window.d3 = d3.select(dom.window.document); + + //Add meta data about the chart to the header + function toTitleCase(str) { + return str.replace(/\w\S*/g, function(txt) { + return txt.charAt(0).toUpperCase() + txt.substr(1).toLowerCase(); + }); + } + var cleanName = ex.package.label || ex.package.name; + var header = dom.window.d3.select(".vl-ex-header"); + header.select("li.title").html(cleanName); + + //Add details about the chart + var details = dom.window.d3.select("div#vl-ex-details"); + + if (ex.package.dataDependecies.length > 0) { + details + .select("li a.vl-ex-data") + .property("href", ex.package.dataDependecies[0]); + } else { + details.select("li a.vl-ex-data").remove(); + } + + details.select("li a.vl-ex-code").property("href", ex.package.main); + details + .select("p.vl-ex-description") + .html("" + cleanName + " - " + ex.package.description); + + if(ex.package.dependencies){ + var dependencies = Object.keys(ex.package.dependencies).map(function(m){ + return{ + library:m, + version:ex.package.dependencies[m] + } + }) + + details + .select("ul.vl-ex-tags") + .selectAll("li.dep") + .data(dependencies) + .enter() + .append("li") + .attr("class", "dep") + .text(d => d.library+" "+d.version); + } + + if(ex.package.rDependencies){ + console.log(ex.package.rDependencies) + var rDependencies = Object.keys(ex.package.rDependencies).map(function(m){ + return{ + library:m, + version:ex.package.rDependencies[m] + } + }) + + details + .select("ul.vl-ex-tags") + .selectAll("li.rdep") + .data(rDependencies) + .enter() + .append("li") + .attr("class", "rdep") + .text(d => d.library+" "+d.version); + } + + details + .select("ul.vl-ex-tags") + .selectAll("li.tag") + .data(ex.package.keywords) .enter() .append("li") - .attr("class","tag") - .text(d=>d) - - console.log(dom.window.document.querySelector("body").outerHTML); // "Hello world" - /***************************************** - *** Output index.html - *****************************************/ - console.log("Created example for : " + ex.dir); - fs.writeFileSync( - ex.paths.root + "/" + ex.paths.index, - dom.window.document.documentElement.outerHTML - ); + .attr("class", "tag") + .text(d => d); + + console.log(dom.window.document.querySelector("body").outerHTML); // "Hello world" + /***************************************** + *** Output index.html + *****************************************/ + console.log("Created example for : " + ex.dir); + fs.writeFileSync( + ex.paths.root + "/" + ex.paths.index, + dom.window.document.documentElement.outerHTML + ); }; diff --git a/scripts/parseExamples.js b/scripts/parseExamples.js index 07a26b4..56da623 100644 --- a/scripts/parseExamples.js +++ b/scripts/parseExamples.js @@ -17,21 +17,21 @@ var examples = fs /* parse each example */ examples.forEach(function(ex) { /**************************** - *** File/path management - *****************************/ + *** File/path management + *****************************/ ex.files = fs.readdirSync(exampleRoot + "/" + ex.dir).filter(function(f) { return f.charAt(0) != "."; }); ////get paths of required files//// ex.paths = {}; - ex.paths.root = exampleRoot + "/" + ex.dir + "/"; //root path + ex.paths.root = exampleRoot + "/" + ex.dir + "/"; //root path ex.paths.index = "index.html"; ex.paths.thumb = "thumb.png"; /**************************** - *** Pull package.json into an object, do some error checking and create index.html - *****************************/ + *** Pull package.json into an object, do some error checking and create index.html + *****************************/ var packageN = ex.files .map(function(f) { @@ -43,33 +43,47 @@ examples.forEach(function(ex) { if (ex.paths.package) { var lines = fs .readFileSync(ex.paths.root + ex.paths.package, "utf8") - .toString() - ex.package = JSON.parse(lines) + .toString(); + ex.package = JSON.parse(lines); //make sure that required fields are found - var requiredProperties = ["homepage","main","name","version"] - requiredProperties.forEach(function(p){ - if(!ex.package[p]){ - console.error("ERROR: Can't create index.html "+ex.paths.root+" since `"+p+"` is missing in package.json." ) - return + var requiredProperties = ["homepage", "main", "name", "version"]; + requiredProperties.forEach(function(p) { + if (!ex.package[p]) { + console.error( + "ERROR: Can't create index.html " + + ex.paths.root + + " since `" + + p + + "` is missing in package.json." + ); + return; } - }) + }); //make sure that main isn't set to index.html - if(ex.package["main"].toLowerCase() == "index.html"){ - console.error("ERROR: Can't create index.html "+ex.paths.root+" since `main` is set to index.html." ) - return + if (ex.package["main"].toLowerCase() == "index.html") { + console.error( + "ERROR: Can't create index.html " + + ex.paths.root + + " since `main` is set to index.html." + ); + return; } //create index.html for the example - makeindex.makeExampleIndex(ex) - }else{ - console.error("ERROR: Can't create index.html "+ex.paths.root+" since no package.json was found." ) + makeindex.makeExampleIndex(ex); + } else { + console.error( + "ERROR: Can't create index.html " + + ex.paths.root + + " since no package.json was found." + ); } /**************************** - *** Make thumbnails - *****************************/ + *** Make thumbnails + *****************************/ var imgs = ex.files .map(function(f) { return f.toLowerCase(); diff --git a/util/web/build/vizLibrary.js b/util/web/build/vizLibrary.js index becb9b5..611dc49 100644 --- a/util/web/build/vizLibrary.js +++ b/util/web/build/vizLibrary.js @@ -49,7 +49,7 @@ var vizLibrary = function () { Takes an array of metadata object (see sample input) and a valid css selector (`parentDiv`) and renders divs styled for for the example gallery (see sample output) - Sample Input for `meta`: + Sample Input for `meta`: [ { "id":"0001-density-lattice", @@ -62,7 +62,7 @@ var vizLibrary = function () { }, ... //add more objects here as desired ] - Sample Output rendered to DOM (one per object in meta: + Sample Output rendered to DOM (one per object in meta:
      0001-density-lattice diff --git a/util/web/css/examples.css b/util/web/css/examples.css index 68a7bd4..505b1af 100644 --- a/util/web/css/examples.css +++ b/util/web/css/examples.css @@ -43,9 +43,10 @@ ul.vl-ex-header li.icon img{ ul.vl-ex-header li.info{ cursor:pointer; padding-left:0.2em; + color:blue; + font-size:1em; } - /***************************** ** Example Data ******************************/ @@ -77,5 +78,13 @@ ul.vl-ex-tags li{ } ul.vl-ex-tags li.tag{ -background:#ffeda0; +background:#ffffb3; +} + +ul.vl-ex-tags li.dep{ +background:#bebada; +} + +ul.vl-ex-tags li.rdep{ +background:#80b1d3; } diff --git a/util/web/data/dataFiles.js b/util/web/data/dataFiles.js index 0c83d6e..d76252a 100644 --- a/util/web/data/dataFiles.js +++ b/util/web/data/dataFiles.js @@ -1,14 +1,6 @@ var dataFiles = [ { - local_path: "F:/GitHub/viz-library/data/cars.csv", - filename: "cars.csv", - ext: "csv", - rel_path: "./data/cars.csv", - rows: 32, - cols: 12 - }, - { - local_path: "F:/GitHub/viz-library/data/ChickWeight.csv", + local_path: "/Users/jeremy/Sites/github/viz-library/data/ChickWeight.csv", filename: "ChickWeight.csv", ext: "csv", rel_path: "./data/ChickWeight.csv", @@ -16,15 +8,15 @@ var dataFiles = [ cols: 5 }, { - local_path: "F:/GitHub/viz-library/data/discrete_scores.csv", - filename: "discrete_scores.csv", + local_path: "/Users/jeremy/Sites/github/viz-library/data/cars.csv", + filename: "cars.csv", ext: "csv", - rel_path: "./data/discrete_scores.csv", - rows: 78, - cols: 2 + rel_path: "./data/cars.csv", + rows: 32, + cols: 12 }, { - local_path: "F:/GitHub/viz-library/data/climate_data.csv", + local_path: "/Users/jeremy/Sites/github/viz-library/data/climate_data.csv", filename: "climate_data.csv", ext: "csv", rel_path: "./data/climate_data.csv", @@ -32,7 +24,16 @@ var dataFiles = [ cols: 10 }, { - local_path: "F:/GitHub/viz-library/data/elements.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/discrete_scores.csv", + filename: "discrete_scores.csv", + ext: "csv", + rel_path: "./data/discrete_scores.csv", + rows: 78, + cols: 2 + }, + { + local_path: "/Users/jeremy/Sites/github/viz-library/data/elements.csv", filename: "elements.csv", ext: "csv", rel_path: "./data/elements.csv", @@ -40,7 +41,7 @@ var dataFiles = [ cols: 10 }, { - local_path: "F:/GitHub/viz-library/data/hys_law.csv", + local_path: "/Users/jeremy/Sites/github/viz-library/data/hys_law.csv", filename: "hys_law.csv", ext: "csv", rel_path: "./data/hys_law.csv", @@ -48,7 +49,7 @@ var dataFiles = [ cols: 18 }, { - local_path: "F:/GitHub/viz-library/data/iris.csv", + local_path: "/Users/jeremy/Sites/github/viz-library/data/iris.csv", filename: "iris.csv", ext: "csv", rel_path: "./data/iris.csv", @@ -56,7 +57,34 @@ var dataFiles = [ cols: 5 }, { - local_path: "F:/GitHub/viz-library/data/safetyData-queries/ADAE.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/queries/fields.csv", + filename: "fields.csv", + ext: "csv", + rel_path: "./data/queries/fields.csv", + rows: 55, + cols: 3 + }, + { + local_path: "/Users/jeremy/Sites/github/viz-library/data/queries/forms.csv", + filename: "forms.csv", + ext: "csv", + rel_path: "./data/queries/forms.csv", + rows: 11, + cols: 2 + }, + { + local_path: + "/Users/jeremy/Sites/github/viz-library/data/queries/queries.csv", + filename: "queries.csv", + ext: "csv", + rel_path: "./data/queries/queries.csv", + rows: 5000, + cols: 11 + }, + { + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData-queries/ADAE.csv", filename: "ADAE.csv", ext: "csv", rel_path: "./data/safetyData-queries/ADAE.csv", @@ -64,7 +92,8 @@ var dataFiles = [ cols: 25 }, { - local_path: "F:/GitHub/viz-library/data/safetyData-queries/ADBDS.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData-queries/ADBDS.csv", filename: "ADBDS.csv", ext: "csv", rel_path: "./data/safetyData-queries/ADBDS.csv", @@ -72,15 +101,8 @@ var dataFiles = [ cols: 22 }, { - local_path: "F:/GitHub/viz-library/data/testData/ADTIMELINES_noDays.csv", - filename: "ADTIMELINES_noDays.csv", - ext: "csv", - rel_path: "./data/testData/ADTIMELINES_noDays.csv", - rows: 1067, - cols: 17 - }, - { - local_path: "F:/GitHub/viz-library/data/testData/ADBDS_missingData.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/testData/ADBDS_missingData.csv", filename: "ADBDS_missingData.csv", ext: "csv", rel_path: "./data/testData/ADBDS_missingData.csv", @@ -89,47 +111,34 @@ var dataFiles = [ }, { local_path: - "F:/GitHub/viz-library/data/testData/ADTIMELINES_partialMissing.csv", - filename: "ADTIMELINES_partialMissing.csv", + "/Users/jeremy/Sites/github/viz-library/data/testData/ADTIMELINES_noDays.csv", + filename: "ADTIMELINES_noDays.csv", ext: "csv", - rel_path: "./data/testData/ADTIMELINES_partialMissing.csv", + rel_path: "./data/testData/ADTIMELINES_noDays.csv", rows: 1067, cols: 17 }, { - local_path: "F:/GitHub/viz-library/data/queries/fields.csv", - filename: "fields.csv", - ext: "csv", - rel_path: "./data/queries/fields.csv", - rows: 55, - cols: 3 - }, - { - local_path: "F:/GitHub/viz-library/data/queries/forms.csv", - filename: "forms.csv", - ext: "csv", - rel_path: "./data/queries/forms.csv", - rows: 11, - cols: 2 - }, - { - local_path: "F:/GitHub/viz-library/data/queries/queries.csv", - filename: "queries.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/testData/ADTIMELINES_partialMissing.csv", + filename: "ADTIMELINES_partialMissing.csv", ext: "csv", - rel_path: "./data/queries/queries.csv", - rows: 5000, - cols: 11 + rel_path: "./data/testData/ADTIMELINES_partialMissing.csv", + rows: 1067, + cols: 17 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/ADBDS.csv", - filename: "ADBDS.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/ADAE.csv", + filename: "ADAE.csv", ext: "csv", - rel_path: "./data/safetyData/ADBDS.csv", - rows: 24669, - cols: 20 + rel_path: "./data/safetyData/ADAE.csv", + rows: 392, + cols: 23 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/ADTIMELINES.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/ADTIMELINES.csv", filename: "ADTIMELINES.csv", ext: "csv", rel_path: "./data/safetyData/ADTIMELINES.csv", @@ -137,64 +146,26 @@ var dataFiles = [ cols: 17 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/ADAE.csv", - filename: "ADAE.csv", - ext: "csv", - rel_path: "./data/safetyData/ADAE.csv", - rows: 392, - cols: 23 - }, - { - local_path: "F:/GitHub/viz-library/data/safetyData/ADCM.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/ADCM.csv", filename: "ADCM.csv", ext: "csv", rel_path: "./data/safetyData/ADCM.csv", rows: 337, cols: 22 }, - { - local_path: "F:/GitHub/viz-library/data/safetyData/raw/medications.csv", - filename: "medications.csv", - ext: "csv", - rel_path: "./data/safetyData/raw/medications.csv", - rows: 654, - cols: 3 - }, - { - local_path: "F:/GitHub/viz-library/data/safetyData/raw/adverseEvents.csv", - filename: "adverseEvents.csv", - ext: "csv", - rel_path: "./data/safetyData/raw/adverseEvents.csv", - rows: 765, - cols: 4 - }, - { - local_path: "F:/GitHub/viz-library/data/safetyData/raw/labs.csv", - filename: "labs.csv", - ext: "csv", - rel_path: "./data/safetyData/raw/labs.csv", - rows: 16, - cols: 6 - }, - { - local_path: "F:/GitHub/viz-library/data/safetyData/raw/vitalSigns.csv", - filename: "vitalSigns.csv", - ext: "csv", - rel_path: "./data/safetyData/raw/vitalSigns.csv", - rows: 27, - cols: 7 - }, { local_path: - "F:/GitHub/viz-library/data/safetyData/raw/scheduleOfEvents.csv", - filename: "scheduleOfEvents.csv", + "/Users/jeremy/Sites/github/viz-library/data/safetyData/ADBDS.csv", + filename: "ADBDS.csv", ext: "csv", - rel_path: "./data/safetyData/raw/scheduleOfEvents.csv", - rows: 8, - cols: 4 + rel_path: "./data/safetyData/ADBDS.csv", + rows: 24669, + cols: 20 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/SDTM/AE.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/SDTM/AE.csv", filename: "AE.csv", ext: "csv", rel_path: "./data/safetyData/SDTM/AE.csv", @@ -202,7 +173,8 @@ var dataFiles = [ cols: 14 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/SDTM/CM.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/SDTM/CM.csv", filename: "CM.csv", ext: "csv", rel_path: "./data/safetyData/SDTM/CM.csv", @@ -210,15 +182,17 @@ var dataFiles = [ cols: 13 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/SDTM/LB.csv", - filename: "LB.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/SDTM/DM.csv", + filename: "DM.csv", ext: "csv", - rel_path: "./data/safetyData/SDTM/LB.csv", - rows: 18784, - cols: 11 + rel_path: "./data/safetyData/SDTM/DM.csv", + rows: 150, + cols: 9 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/SDTM/SV.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/SDTM/SV.csv", filename: "SV.csv", ext: "csv", rel_path: "./data/safetyData/SDTM/SV.csv", @@ -226,7 +200,17 @@ var dataFiles = [ cols: 5 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/SDTM/VS.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/SDTM/LB.csv", + filename: "LB.csv", + ext: "csv", + rel_path: "./data/safetyData/SDTM/LB.csv", + rows: 18784, + cols: 11 + }, + { + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/SDTM/VS.csv", filename: "VS.csv", ext: "csv", rel_path: "./data/safetyData/SDTM/VS.csv", @@ -234,11 +218,48 @@ var dataFiles = [ cols: 11 }, { - local_path: "F:/GitHub/viz-library/data/safetyData/SDTM/DM.csv", - filename: "DM.csv", + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/raw/adverseEvents.csv", + filename: "adverseEvents.csv", ext: "csv", - rel_path: "./data/safetyData/SDTM/DM.csv", - rows: 150, - cols: 9 + rel_path: "./data/safetyData/raw/adverseEvents.csv", + rows: 765, + cols: 4 + }, + { + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/raw/labs.csv", + filename: "labs.csv", + ext: "csv", + rel_path: "./data/safetyData/raw/labs.csv", + rows: 16, + cols: 6 + }, + { + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/raw/scheduleOfEvents.csv", + filename: "scheduleOfEvents.csv", + ext: "csv", + rel_path: "./data/safetyData/raw/scheduleOfEvents.csv", + rows: 8, + cols: 4 + }, + { + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/raw/medications.csv", + filename: "medications.csv", + ext: "csv", + rel_path: "./data/safetyData/raw/medications.csv", + rows: 654, + cols: 3 + }, + { + local_path: + "/Users/jeremy/Sites/github/viz-library/data/safetyData/raw/vitalSigns.csv", + filename: "vitalSigns.csv", + ext: "csv", + rel_path: "./data/safetyData/raw/vitalSigns.csv", + rows: 27, + cols: 7 } ]; diff --git a/util/web/data/examples.js b/util/web/data/examples.js index 52f218c..6693d17 100644 --- a/util/web/data/examples.js +++ b/util/web/data/examples.js @@ -1 +1 @@ -var examples =[{"dir":"0001-density-lattice","files":["0001-density-lattice.R","0001-density-lattice.png","0001-density-lattice_thumb.png","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0001-density-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0002-dotplot-ggplot","files":["0002-dotplot-ggplot.R","0002-dotplot-ggplot.png","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0002-dotplot-ggplot/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0003-dotplot-lattice","files":["0003-dotplot-lattice.R","0003-dotplot-lattice.png","0003-dotplot-lattice_tags.txt","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0003-dotplot-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0004-pirateplot-yarrr","files":["0004-pirateplot-yarrr.R","0004-pirateplot-yarrr.png","0004-pirateplot-yarrr_tags.txt","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0004-pirateplot-yarrr/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0005-unemploy-mvtsplot","files":["0005-unemploy-mvtsplot.R","0005-unemploy-mvtsplot.png","README.md","blsunemployment.csv","index.html","thumb.png"],"paths":{"root":"./examples/0005-unemploy-mvtsplot/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0006-precip-levelplot-lattice","files":["0006-precip-levelplot-lattice.R","0006-precip-levelplot-lattice.png","Precipitations.csv","README.md","index.html","thumb.png"],"paths":{"root":"./examples/0006-precip-levelplot-lattice/","index":"index.html","thumb":"thumb.png","package":null}},{"dir":"0007-simple-barchart-webcharts","files":["OlympicMedals2012.csv","README.md","example.html","index.html","package.json","simpleBarChart.js","thumb.png"],"paths":{"root":"./examples/0007-simple-barchart-webcharts/","index":"index.html","thumb":"thumb.png","package":"package.json"},"package":{"homepage":"example.html","main":"simpleBarChart.js","name":"simple-barchart-webcharts","version":"1.0.0","description":"This is a simple bar chart showing counts of medals won by country at the 2012 summer Olympics. 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var list = parentDiv.append("ul"); - var items = list.selectAll("li").data(meta).enter().append("li"); + var items = list + .selectAll("li") + .data(meta) + .enter() + .append("li"); //id items diff --git a/util/web/src/buildPubList.js b/util/web/src/buildPubList.js index 5a8be9c..a27292a 100644 --- a/util/web/src/buildPubList.js +++ b/util/web/src/buildPubList.js @@ -15,13 +15,22 @@ export default function buildPubList(meta, parentElement) { var wraps = items.append("div").attr("class", "pub-wrap"); //title - wraps.append("p").attr("class", "title").text(d => d.title); + wraps + .append("p") + .attr("class", "title") + .text(d => d.title); //description - wraps.append("p").attr("class", "description").text(d => d.text); + wraps + .append("p") + .attr("class", "description") + .text(d => d.text); //author - wraps.append("p").attr("class", "author").text(d => d.keyValues[0].value); + wraps + .append("p") + .attr("class", "author") + .text(d => d.keyValues[0].value); //tags function cap1(string) { diff --git a/util/web/src/dataPreview.js b/util/web/src/dataPreview.js index 24e2d23..dfc006e 100644 --- a/util/web/src/dataPreview.js +++ b/util/web/src/dataPreview.js @@ -2,7 +2,11 @@ export default function dataPreview(dataFiles) { var myFiles = d3.select(".file-list"); var tbody = myFiles.append("tbody"); - var rows = tbody.selectAll("tr").data(dataFiles).enter().append("tr"); + var rows = tbody + .selectAll("tr") + .data(dataFiles) + .enter() + .append("tr"); rows .append("td") @@ -14,9 +18,12 @@ export default function dataPreview(dataFiles) { }) .style("cursor", "help"); - rows.append("td").append("small").text(function(d) { - return " " + d.rows + " Rows x " + d.cols + " Cols"; - }); + rows + .append("td") + .append("small") + .text(function(d) { + return " " + d.rows + " Rows x " + d.cols + " Cols"; + }); rows .append("td") @@ -35,18 +42,21 @@ export default function dataPreview(dataFiles) { .select("strong") .text("First 10 rows of " + d.rel_path); - label.append("button").text("Clear Preview").on("click", function() { - rows.classed("selected", false); - d3 - .select(".data-preview") - .select("strong") - .html("Click 🔍 to preview a data set"); - d3 - .select(".data-preview") - .select(".data-table") - .selectAll("*") - .remove(); - }); + label + .append("button") + .text("Clear Preview") + .on("click", function() { + rows.classed("selected", false); + d3 + .select(".data-preview") + .select("strong") + .html("Click 🔍 to preview a data set"); + d3 + .select(".data-preview") + .select(".data-table") + .selectAll("*") + .remove(); + }); d3.csv(d.rel_path, function(error, data) { var sub = data.filter(function(d, i) { From b9bead0747e7b48d530448041fe5c93e80f0499c Mon Sep 17 00:00:00 2001 From: jwildfire Date: Sun, 4 Mar 2018 09:28:20 -0800 Subject: [PATCH 04/19] add repo link. fixes #87 --- .../0007-simple-barchart-webcharts/index.html | 6 ++++-- examples/0009-web-codebook-demo/index.html | 6 ++++-- examples/0009-web-codebook-demo/package.json | 1 + scripts/buildExample/exampleHeaderStub.html | 6 ++++-- scripts/buildExample/makeExampleIndex.js | 14 +++++++++++--- util/web/css/examples.css | 18 ++++++++++++++++++ util/web/data/examples.js | 2 +- 7 files changed, 43 insertions(+), 10 deletions(-) diff --git a/examples/0007-simple-barchart-webcharts/index.html b/examples/0007-simple-barchart-webcharts/index.html index b5f6d8f..ea76020 100644 --- a/examples/0007-simple-barchart-webcharts/index.html +++ b/examples/0007-simple-barchart-webcharts/index.html @@ -8,6 +8,7 @@
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        • Data
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          • +
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        • interactive
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