LGE_MRI_MyoSeg_DL

Please download the datasets from respective websites.

emidec dataset download link

Use preprocessing function to extract data from nifity to png and save each slice for training and testing

#Emidec_challenge_dataset.py #MSCMR_2019_preprocessing.py

We will upload the model, training, testing module soon.

The visualization of Dice and HD can be calculated.

The statistical test and bandaltman plot between surface area of GT and predicted segmentation map can be calcalulated.

Name		Name	Last commit message	Last commit date
Latest commit History 13 Commits
Emidec_challenge_dataset.py		Emidec_challenge_dataset.py
MSCMR_2019_preprocessing.py		MSCMR_2019_preprocessing.py
Models		Models
MyoPos2020_datapreprocessing.py		MyoPos2020_datapreprocessing.py
Nifti_2Dslices_conversion.py		Nifti_2Dslices_conversion.py
Performance_Analysis_paper_Tables_fig.py		Performance_Analysis_paper_Tables_fig.py
Private_LGEMRI_datapreprocessing.py		Private_LGEMRI_datapreprocessing.py
README.md		README.md
Testing		Testing
Visualization_statistical_Analysis.py		Visualization_statistical_Analysis.py
contouring_masks.py		contouring_masks.py
training_models		training_models