.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
/*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# =========================
# Operating System Files
# =========================

# Windows
# =========================

# Windows thumbnail cache files
Thumbs.db
ehthumbs.db
ehthumbs_vista.db

# Folder config file
Desktop.ini

# Recycle Bin used on file shares
$RECYCLE.BIN/

# Windows Installer files
*.cab
*.msi
*.msm
*.msp

# Windows shortcuts
*.lnk
.Rproj.user

# Avoid compiled C files
src/*.o
src/*.so
src/*.dll

scratch/ExternalComparison/ExternalCompExpResults\.html
scratch/InternalComparison/InternalComparisonExperiment\.html

scratch/ExternalComparison/ExternalComparison\.html
scratch/ExternalComparison/ExComp3/parallel_temp_output_*\.rds
scratch/ExternalComparison/ExComp4/*parallel_temp_output_*
scratch/ExternalComparison/ExternalComparer4bass_quarterdone\.rds
scratch/ExternalComparison/ExternalComparer4_mostlydone\.rds
scratch/ExternalComparison/ExComp5_16k_of_17k_beforefixingsupp\.rds
scratch/ExternalComparison/ExComp5_1400_of_11k\.rds
scratch/ExternalComparison/ExComp5_12kdone\.rds

scratch/redTime/redTimeSuppExp2/redTimeSuppExp2_od10/parallel_temp_output_*\.rds
scratch/redTime/redTimeSuppExp2/redTimeSuppExp2_od50/parallel_temp_output_*\.rds
scratch/redTime/redTimeSuppExp2/redTimeSuppExp_Results\.html
scratch/redTime/redTimeData/
scratch/redTime/redTimeMVExp1/redTimeMVExp1_completed\.rds
scratch/redTime/redTimeMVExp2/Exp2_completed\.rds

scratch/thesis/

inst/doc