update vignette. remove args2var

DESCRIPTION

@@ -25,7 +25,7 @@ BugReports: https://github.com/RajLabMSSM/echoverseTemplate/issues
 Encoding: UTF-8
 Depends: R (>= 4.1)
 biocViews:
-    Genetics, FunctionalGenomics, SystemsBiology
+    Software, Genetics, FunctionalGenomics, SystemsBiology
 Imports:
 Suggests:
     rworkflows,

README.Rmd

@@ -1,6 +1,6 @@
 ---
 title: ""  
-author: "`r rworkflows::use_badges()`"
+author: "`r rworkflows::use_badges(add_doi = '10.1093/bioinformatics/btab658')`"
 output:
   github_document
 ---
@@ -30,7 +30,7 @@ library(`r pkg`)
 ## Documentation 
 
 ### [Website](https://rajlabmssm.github.io/`r pkg`) 
-### [Getting started](https://rajlabmssm.github.io/`r pkg`/articles/`r pkg`) 
+### [Get started](https://rajlabmssm.github.io/`r pkg`/articles/`r pkg`) 
 
 <hr>
 

README.md

@@ -1,13 +1,17 @@
-<img src= 'https://github.com/RajLabMSSM/echoverseTemplate/raw/master/inst/hex/hex.png' height= '300' ><br><br><br><br>
+<img src='https://github.com/RajLabMSSM/echoverseTemplate/raw/master/inst/hex/hex.png' title='Hex sticker for echoverseTemplate' height='300'><br>
+[![License:
+GPL-3](https://img.shields.io/badge/license-GPL--3-blue.svg)](https://cran.r-project.org/web/licenses/GPL-3)
+[![](https://img.shields.io/badge/doi-10.1093/bioinformatics/btab658-blue.svg)](https://doi.org/10.1093/bioinformatics/btab658)
 [![](https://img.shields.io/badge/devel%20version-0.99.0-black.svg)](https://github.com/RajLabMSSM/echoverseTemplate)
-[![R build
-status](https://github.com/RajLabMSSM/echoverseTemplate/workflows/rworkflows/badge.svg)](https://github.com/RajLabMSSM/echoverseTemplate/actions)
-[![](https://img.shields.io/github/last-commit/RajLabMSSM/echoverseTemplate.svg)](https://github.com/RajLabMSSM/echoverseTemplate/commits/master)
 [![](https://img.shields.io/github/languages/code-size/RajLabMSSM/echoverseTemplate.svg)](https://github.com/RajLabMSSM/echoverseTemplate)
+[![](https://img.shields.io/github/last-commit/RajLabMSSM/echoverseTemplate.svg)](https://github.com/RajLabMSSM/echoverseTemplate/commits/master)
+<br> [![R build
+status](https://github.com/RajLabMSSM/echoverseTemplate/workflows/rworkflows/badge.svg)](https://github.com/RajLabMSSM/echoverseTemplate/actions)
 [![](https://codecov.io/gh/RajLabMSSM/echoverseTemplate/branch/master/graph/badge.svg)](https://codecov.io/gh/RajLabMSSM/echoverseTemplate)
-[![License:
-GPL-3](https://img.shields.io/badge/license-GPL--3-blue.svg)](https://cran.r-project.org/web/licenses/GPL-3)
-¶ <h4> ¶ Authors: <i>Brian Schilder, Jack Humphrey, Towfique Raj</i> ¶
+<br>
+<a href='https://app.codecov.io/gh/RajLabMSSM/echoverseTemplate/tree/master' target='_blank'><img src='https://codecov.io/gh/RajLabMSSM/echoverseTemplate/branch/master/graphs/icicle.svg' title='Codecov icicle graph' width='200' height='50' style='vertical-align: top;'></a>  
+<h4>  
+Authors: <i>Brian Schilder, Jack Humphrey, Towfique Raj</i>  
 </h4>
 
 ## `echoverseTemplate`: echoversePackageDescription.

vignettes/echoverseTemplate.Rmd

@@ -1,13 +1,14 @@
 ---
-title: "Getting Started" 
-author: "<h4>Author: <i>Brian M. Schilder</i></h4>" 
-date: "<h4>Updated: <i>`r format( Sys.Date(), '%b-%d-%Y')`</i></h4>"
-output:
-  BiocStyle::html_document
-vignette: >
-    %\VignetteIndexEntry{echodata} 
-    %\usepackage[utf8]{inputenc}
-    %\VignetteEngine{knitr::rmarkdown}
+title: Get started
+author: '<h4>Authors: <i>`r auths <- eval(parse(text = gsub("person","c",read.dcf("../DESCRIPTION",
+  fields = "Authors@R"))));paste(auths[names(auths)=="given"],auths[names(auths)=="family"],
+  collapse = ", ")`</i></h4>'
+date: '<h4>Vignette updated: <i>`r format( Sys.Date(), "%b-%d-%Y")`</i></h4>'
+output: BiocStyle::html_document
+vignette: |
+  %\VignetteIndexEntry{echoverseTemplate}
+   %\usepackage[utf8]{inputenc}
+  %\VignetteEngine{knitr::rmarkdown}
 ---
 
 
@@ -38,3 +39,4 @@ utils::sessionInfo()
 
 </details>  
 
+<br>