Skip to content

Issues: RTXteam/RTX-KG2

Beta
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

203 Open 212 Closed
203 Open 212 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

for JensenLab KL/AT information, use 'not provided' for knowledge level
#444 opened Apr 22, 2025 by saramsey
for JensenLab ingest, use predicatebiolink:occurs_together_in_literature_with
#443 opened Apr 22, 2025 by saramsey
improve logic for determining EPC information for JensenLab edges question Further information is requested
#442 opened Apr 20, 2025 by saramsey
2
Add check for Knowledge_level and agent_type during KG2.10.2 build
#441 opened Apr 16, 2025 by sundareswarpullela
@bazarkua
Update Drug Central to the latest release (Nov. 1, 2023) enhancement New feature or request
#440 opened Apr 4, 2025 by saramsey
upgrade ChEMBL to Chembl release 35 for the next KG2pre build enhancement New feature or request
#439 opened Apr 4, 2025 by saramsey
do not map any SemMedDB-derived edges to biolink:subclass_of bug Something isn't working verify this fix in next kg2 build
#438 opened Apr 3, 2025 by saramsey
@saramsey
1
many qualifiers in predicate-remap.yaml are missing object_aspect or object_direction bug Something isn't working
#437 opened Mar 25, 2025 by saramsey
@saramsey
1
check if KG2pre is using the correct CURIE prefixes
#435 opened Feb 27, 2025 by saramsey
@sundareswarpullela
change predicate for DisGeNet bug Something isn't working
#434 opened Feb 20, 2025 by saramsey
@bazarkua
5
remove requirements-kg2-build.txt entries that are no longer needed now that ontobio is removed verify this fix in next kg2 build
#433 opened Feb 20, 2025 by saramsey
@saramsey @bazarkua
1
Check for incorrect CURIE prefixes in KG2pre build system
#432 opened Feb 5, 2025 by saramsey
5
Build KG2.10.2pre
#431 opened Feb 5, 2025 by saramsey
@bazarkua @sundareswarpullela
8
update to Clinical Trials KP TSV file format has broken clinicaltrialskg_tsv_to_kg_jsonl.py verify this fix in next kg2 build
#430 opened Feb 5, 2025 by saramsey
1
Look into ingest of PANTHER into RTX-KG2pre
#429 opened Jan 27, 2025 by saramsey
Look into ingest of RHEA into RTX-KG2
#428 opened Jan 27, 2025 by saramsey
KG2pre build instance setup script should install jq by default housekeeping verify this fix in next kg2 build
#421 opened Nov 13, 2024 by saramsey
CTKP Castleman treats edge not returned from KG2.10.1 bug Something isn't working
#419 opened Nov 8, 2024 by amykglen
18
Wrong infores curie used on Clinical Trials KP edges (infores:biothings-multiomics-clinicaltrials) bug Something isn't working high priority verify this fix in next kg2 build
#414 opened Oct 3, 2024 by amykglen
2
Node Normalization of conflation for T1D
#410 opened Sep 4, 2024 by jaredroach
Pull File from S3 Bucket when cURL Fails caution tricky
#409 opened Sep 2, 2024 by ecwood
@ecwood
PathWhiz?
#407 opened Aug 13, 2024 by cbizon
3
KL/AT Updates
#406 opened Aug 8, 2024 by ecwood
Handling Mondo's disease_responds_to edges
#403 opened Jul 30, 2024 by ecwood
drug_regulatory_status_world_wide is not a valid predicate bug Something isn't working
#402 opened Jul 18, 2024 by amykglen
3
ProTip! Add no:assignee to see everything that’s not assigned.