From e4cf2a05a79d7abc5f59a7d17e6f77c98ff0e730 Mon Sep 17 00:00:00 2001 From: acevedol <59181061+acevedol@users.noreply.github.com> Date: Mon, 1 Apr 2024 15:58:22 -0700 Subject: [PATCH] Update extract-dgidb.sh --- extract-dgidb.sh | 10 +++------- 1 file changed, 3 insertions(+), 7 deletions(-) diff --git a/extract-dgidb.sh b/extract-dgidb.sh index 965aaf60..cf32f4c9 100755 --- a/extract-dgidb.sh +++ b/extract-dgidb.sh @@ -17,15 +17,11 @@ source ${config_dir}/master-config.shinc dgidb_dir=${1:-"${BUILD_DIR}/dgidb/"} dgidb_file=interactions.tsv -dgidb_base_url="https://www.dgidb.org/" -mkdir -p ${dgidb_dir} +dgidb_latest_download_url="https://www.dgidb.org/data/2022-Feb/interactions.tsv" -# not the most future proof, but finds the first table entry of interactions.tsv and grabs url from href -dgidb_path=`${curl_get} http://www.dgidb.org/downloads | grep -m 1 'interactions.tsv' | sed 's: