Phylogenetics of Alphacoronaviruses

This is the repository for supplementary materials for the upcoming publication

Directories:

📁 01_Phylogenetics - phylogenetic analysis
📁 02_Seqs_identity - nucleotide sequences identity analysis
📁 03_Map - phylogeographic analysis
📁 04_Primers - PCR primers selectivity analysis

Instruction:

Create new environment phoacr

conda env create -f phoacr.yaml

Pipeline:

Figure 1. Pipeline overview.

System

OS: Ubuntu 22.04 (WSL2 on Windows 11 22H2)
RAM: 32GB (16 for WSL2)
CPU: Intel Xeon E5-2670v3