25.1.14

25.1.14

Highlights

• New UI updates:
  • An Event Logs page for seeing the logs generated by your Pioreactors
  • A detailed overview of your cluster's leader-specific duties on the new Leader's page.
    • See the Leader's filesystem, logs, update cluster clocks, and view important running jobs.
• View different Pioreactors' plugins on the Plugins page, and install to specific Pioreactor vs entire cluster.
• Manage your calibrations from the UI's new Calibrations page.
  • View existing calibrations, set active calibrations, and download calibration files.

Web API changes

• New API to retrieve and set clocks on Pioreactors
• GET /api/units/<pioreactor_unit>/system/utc_clock
• GET /unit_api/system/utc_clock
• POST /api/system/utc_clock
• POST /unit_api/system/utc_clock
• New log APIs
• GET /api/experiments/<experiment>/recent_logs
• GET /api/experiments/<experiment>/logs
• GET /api/logs
• GET /api/workers/<pioreactor_unit>/experiments/<experiment>/recent_logs
• GET /api/workers/<pioreactor_unit>/experiments/<experiment>/logs
• GET /api/units/<pioreactor_unit>/logs
• POST /workers/<pioreactor_unit>/experiments/<experiment>/logs
• New calibrations APIs
• GET /api/workers/<pioreactor_unit>/calibrations
• GET /unit_api/calibrations
• GET /unit_api/active_calibrations
• GET /api/workers/<pioreactor_unit>/calibrations/<device>
• GET /unit_api/calibrations/<device>
• PATCH /api/workers/<pioreactor_unit>/active_calibrations/<device>/<cal_name>
• PATCH /unit_api/active_calibrations/<device>/<cal_name>
• DELETE /api/workers/<pioreactor_unit>/active_calibrations/<device>/<cal_name>
• DELETE /api/workers/<pioreactor_unit>/calibrations/<device>/<cal_name>
• DELETE /unit_api/active_calibrations/<device>/<cal_name>
• DELETE /unit_api/calibrations/<device>/<cal_name>
• New API for plugins
• GET /api/units/<pioreactor_unit>/plugins/installed
• PATCH /api/units/<pioreactor_unit>/plugins/install
• PATCH /api/units/<pioreactor_unit>/plugins/uninstall
• Changed the settings API (see docs).
• New /api/units that returns a list of units (this is workers & leader). If leader is also a worker, then it's identical to /api/workers
• New /api/experiments/<experiment>/historical_worker_assignments that stores historical assignments to experiments
• New Path API for getting the dir structure of ~/.pioreactor:
• /unit_api/system/path/<path>

24.12.10

24.12.10

• Hotfix for UI settings bug

24.12.3

24.12.3

• fix dosing in the UI not working in Manage All
• New Export Data page
• New API for exporting datasets

24.10.30

24.10.30

• fix manual dosing updates in the UI not working.

24.10.29

24.10.29

• fix for workers being locked up

24.10.28

24.10.28

• fix for env bug

24.10.20

24.10.20

Bug fix release for the previous version.

24.10.16

24.10.16

• New dataset exports from the Export data page in the UI: calibrations and liquid-volumes.
• Added a "partition by unit" option to the Export data page that will create a csv per Pioreactor in the export, instead of grouping them all together.
• faster UI response times when starting jobs
• Because we are now storing liquid_volume in the database, you can add charts in the UI that track the volume over time:
  1. Add the following yaml contents to ~/.pioreactor/plugins/contrib/charts/lqiuid_volume.yaml: https://gist.github.com/CamDavidsonPilon/95eef30189101da69f706d02ef28d972
  2. In your config.ini, under ui.overview.charts, add the line liquid_volume=1.
• New API endpoints for getting the current settings of a running job:
  • Per pioreactor:
    • GET: /unit_api/jobs/settings/job_name/<job_name>
    • GET: /unit_api/jobs/settings/job_name/<job_name>/setting/<setting>
  • Across the cluster:
    • GET: /api/jobs/settings/job_name/<job_name>/setting/<setting>
    • GET: /api/jobs/settings/job_name/<job_name>/experiments/<experiment>
    • GET: /api/jobs/settings/job_name/<job_name>/experiments/<experiment>/setting/<setting>
    • GET: /api/jobs/settings/workers/<unit>/job_name/<job_name>/experiments/<experiment>
    • GET: /api/jobs/settings/workers/<unit>/job_name/<job_name>/experiments/<experiment>/setting/<setting>
      Ex: query the temperature of a Pioreactor: curl http://pio01.local/unit_api/jobs/settings/job_name/temperature_automation/setting/temperature

24.10.1

24.10.1

• bug fix for "Manage all" that would start activities in all Pioreactors, whether they were in the experiment or not.
• fix for bug when clicking a legend element it not hiding
• fix
• amount of data shown on charts is now a function of the OD sampling rate
• allow for showing more than 16 workers in a chart.
• bug fix for "color" error when many workers on a chart.
• bug fix for leader starting when an experiment profile was started which referenced leader, even if the leader wasn't in the experiment.

24.9.25

24.9.25

• Better experiment selection dropdown
• replace momentjs with dayjs
• reduce the list of supported browsers