Configuration

Requirements

This tool requires a Conda environment with the following packages:

• Python, tested with v3.7.3 but anything above v3 should be fine
• requests, tested with v2.22.0
• numpy, tested with v1.18.1
• nltk, tested with v3.4.4
• sqlite, tested with v3.30.1
• psutil, tested with 5.6.7
• HMMER, tested with v3.2.1

How much space do we need? The lineage annotation requires quite a lot of space since NOG's HMM database is quite extensive. For the taxonomy you will need around 2.8 terabytes. The rest of the HMMs only take up around 200 gibabytes.
You don't need to use all of this data though! To remove them, see this.