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CrossInfectMTB

Repo for bioinformatic analysis about MTB infections

Overview

This repository contains scripts for the bioinformatic analysis of Mycobacterium tuberculosis (MTB) infections, focusing on host-strain compatibility and infection outcomes. The analysis includes processing of cytometry data, microscopy images, and RNA sequencing data.

Repository Structure

  • process_cytometrydata/: Scripts for processing flow cytometry data.
  • process_microscopy/: Scripts for processing microscopy infectio ratio.
  • process_rnaseq/: Scripts for processing RNA sequencing data and comparisons.
  • process_rnaseq-mappings/: Scripts for managing RNA-seq read mappings.
  • LICENSE: License information.
  • README.md: This file.

Getting Started

Prerequisites

  • R

Installation

  1. Clone the repository: 
    git clone https://github.com/PathoGenOmics-Lab/CrossInfectMTB.git
cd CrossInfectMTB