PathoGenOmics Lab
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transcluster
transcluster PublicA Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their transmission fitness
Python 2
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misb_training_2024
misb_training_2024 PublicMaster on Integrative Synthetic Biology (MISB) training sessions 2024
Jupyter Notebook 1
Repositories
- ena-spike-ntd-repdel-analysis Public
A Snakemake workflow with associated scripts used for detecting spike NTD repaired deletions in SARS-CoV-2 Omicron BA.1 lineage reads. Manuscript under review.
- transcluster Public
A Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their transmission fitness