add setup (#280)

* 1. add utils.run_check
2. add setup files including setup.py and pyproject.toml

* update frontpage in  docs

* remove rank in set_random_seed

* update setup.py

* update issue hyper-link

* change batch size from 150 to 100 for viv.py

README.md

@@ -66,7 +66,7 @@ PaddleScience 是一个基于深度学习框架 PaddlePaddle 开发的科学计
 
 ## 支持
 
-如使用过程中遇到问题或想提出开发建议，欢迎在 [**Issue**](https://github.com/PaddlePaddle/PaddleScience/issues/new) 页面新建 issue。
+如使用过程中遇到问题或想提出开发建议，欢迎在 [**Issue**](https://github.com/PaddlePaddle/PaddleScience/issues/new/choose) 页面新建 issue。
 
 ## 贡献代码
 

docs/index.md

@@ -17,7 +17,7 @@ PaddleScience 是一个基于深度学习框架 PaddlePaddle 开发的科学计
 
 ## 支持
 
-- 如使用过程中遇到问题或想提出开发建议，欢迎在 [**Issue**](https://github.com/PaddlePaddle/PaddleScience/issues/new) 页面新建 issue。
+- 如使用过程中遇到问题或想提出开发建议，欢迎在 [**Issue**](https://github.com/PaddlePaddle/PaddleScience/issues/new/choose) 页面新建 issue。
 
 ## 贡献代码
 

examples/fsi/viv.py

@@ -41,7 +41,7 @@
             "label_keys": ("eta", "f"),
             "weight_dict": {"eta": 100},
         },
-        "batch_size": 150,
+        "batch_size": 100,
         "sampler": {
             "name": "BatchSampler",
             "drop_last": False,

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "paddlesci"
-version = "1.0.1"
+version = "1.0.0"
 description = "A library for scientific machine learning"
 readme = "README.md"
 license = {text = "Apache-2.0"}
@@ -13,6 +13,7 @@ authors = [
 ]
 requires-python = ">=3.7"
 keywords = [
+    "Machine learning",
     "Deep learning",
     "Differential equations",
     "AI4Science",
@@ -33,7 +34,7 @@ classifiers = [
     "Topic :: Scientific/Engineering :: Mathematics",
 ]
 dependencies = [
-    "numpy",
+    "numpy>=1.20.0",
     "scipy",
     "sympy",
     "matplotlib",
@@ -43,10 +44,12 @@ dependencies = [
     "scipy",
     "visualdl",
     "pyvista==0.37.0",
-    "pysdf",
     "pyyaml",
     "scikit-optimize",
     "h5py",
+    "meshio==5.3.4",
+    "tqdm",
+    "imageio",
 ]
 
 [project.urls]
@@ -57,4 +60,4 @@ Documentation = "https://paddlescience-docs.readthedocs.io/zh/latest/"
 
 [tool.setuptools.packages.find]
 where = ["."]
-exclude = ["docs*", "examples*", "jointContribution*", "paddlescience*", "test_tipc*", "tests*", "tools*"]
+exclude = ["docs*", "examples*", "jointContribution*", "test_tipc*", "tests*", "tools*"]

setup.py

@@ -0,0 +1,67 @@
+"""
+Setup configuration
+"""
+
+import setuptools
+
+
+def readme():
+    """README"""
+    with open("README.md") as f:
+        return f.read()
+
+
+if __name__ == "__main__":
+    setuptools.setup(
+        name="paddlesci",
+        version="1.0.0",
+        author="PaddlePaddle",
+        url="https://github.com/PaddlePaddle/PaddleScience",
+        description=(
+            "PaddleScience is SDK and library for developing AI-driven scientific computing"
+            " applications based on PaddlePaddle."
+        ),
+        long_description=readme(),
+        long_description_content_type="text/markdown",
+        packages=setuptools.find_packages(
+            exclude=(
+                "docs",
+                "examples",
+                "jointContribution",
+                "test_tipc",
+                "tests",
+                "tools",
+            )
+        ),
+        classifiers=[
+            "Development Status :: 5 - Production/Stable",
+            "Intended Audience :: Science/Research",
+            "License :: OSI Approved :: Apache Software License",
+            "Programming Language :: Python :: 3 :: Only",
+            "Programming Language :: Python :: 3.7",
+            "Programming Language :: Python :: 3.8",
+            "Programming Language :: Python :: 3.9",
+            "Programming Language :: Python :: 3.10",
+            "Topic :: Scientific/Engineering",
+            "Topic :: Scientific/Engineering :: Artificial Intelligence",
+            "Topic :: Scientific/Engineering :: Mathematics",
+        ],
+        install_requires=[
+            "numpy>=1.20.0",
+            "scipy",
+            "sympy",
+            "matplotlib",
+            "vtk",
+            "pyevtk",
+            "wget",
+            "scipy",
+            "visualdl",
+            "pyvista==0.37.0",
+            "pyyaml",
+            "scikit-optimize",
+            "h5py",
+            "meshio==5.3.4",
+            "tqdm",
+            "imageio",
+        ],
+    )