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Version 1.7.1
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armintoepfer committed Aug 7, 2018
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43 changes: 25 additions & 18 deletions README.md
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Expand Up @@ -85,25 +85,11 @@ The sort order is defined by the barcode indices, lowest first.
* Guess the subset of barcodes used in an input Barcode Set given a mean barcode score threshold
* Enhanced filtering options to remove ambiguous calls

## Changelog
## Latest Version

* 1.7.0: Fix corner-case bug, included in SMRT Link 6.0.0
* 1.6.1: Fix `--min-end-score` in combination with `--isoseq`
* 1.6.0:
* New filter `--min-end-score`
* Add latest filters to summary file
* New IsoSeq default parameters
* Fix streaming of asymmetric BAM files
* 1.5.0: Support spacer sequence between adapter and barcode
* 1.4.0:
* New filter `--min-ref-span` and `--min-scoring-regions`
* Single-side library improvements
* 1.3.0: `--peek-guess` uses only full-length ZMWs
* 1.2.0:
* Streaming of split BAM files
* New fat binary build approach
* 1.1.0: IsoSeq support
* 1.0.0: Initial release, included in SMRT Link 5.1.0
Version **1.7.1**: Fix rare-care PBI generation bug, included in SMRT Link 6.0.0

[Full changelog here](#full-changelog)

## Execution

Expand Down Expand Up @@ -990,6 +976,27 @@ false positives.
* Calls barcodes per barcode region and does not enforce adapter coupling
* Nice reports for QC

## Full Changelog

* 1.7.1: Fix rare-care PBI generation bug, included in SMRT Link 6.0.0
* 1.7.0: Fix corner-case bug
* 1.6.1: Fix `--min-end-score` in combination with `--isoseq`
* 1.6.0:
* New filter `--min-end-score`
* Add latest filters to summary file
* New IsoSeq default parameters
* Fix streaming of asymmetric BAM files
* 1.5.0: Support spacer sequence between adapter and barcode
* 1.4.0:
* New filter `--min-ref-span` and `--min-scoring-regions`
* Single-side library improvements
* 1.3.0: `--peek-guess` uses only full-length ZMWs
* 1.2.0:
* Streaming of split BAM files
* New fat binary build approach
* 1.1.0: IsoSeq support
* 1.0.0: Initial release, included in SMRT Link 5.1.0

## DISCLAIMER

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