README.md

Data-driven identification of inherent features of eukaryotic stress-responsive genes

Table of Contents

1. OsmoAtlas: Yeast osmostress-responsive genes catalog (R Markdown)
2. Features of yeast stress genes (R Markdown)
3. Features of human stress genes (R Markdown)
4. Figures (R Markdown)
5. Supplementary tables (R markdown)
6. Figures (pdf)
7. Supplementary tables (files)

About

Code and data for reproducing the analyses of the paper:

"Data-driven identification of inherent features of eukaryotic stress-responsive genes"

All requiered data are in the corresponding directories except the following files due to size limitations:

• D2P2: http://d2p2.pro/downloads/genomes.protein.gz

• Human BioGRID: https://downloads.thebiogrid.org/File/BioGRID/Release-Archive/BIOGRID-3.5.181/BIOGRID-ALL-3.5.181.tab2.zip

Download the data and put them into data/original_data/ for full reproducibility