included HK in benchmark #127
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| name: Conda Build and Test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - dev | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.12 | |
| channels: conda-forge,defaults,bioconda | |
| - name: Install mamba, boa and conda-build | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda install conda-forge::mamba conda-forge::boa conda-forge::conda-build anaconda-client | |
| shell: bash -l {0} | |
| - name: Build package | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda mambabuild recipe | |
| mamba install --use-local pridepy | |
| pridepy --help | |
| shell: bash -l {0} | |
| - name: Test the installed package | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| pridepy --help | |
| shell: bash -l {0} | |
| - name: Test download file with aspera from conda | |
| run: | | |
| conda activate pridepy | |
| pridepy download-file-by-name -a PXD022105 -o ./ -f checksum.txt -p aspera | |
| shell: bash -l {0} |