v0.5.2 #81

nebfield · 2024-02-22T11:43:11Z

Changelog

Bug fixes

Fix parsing optional is_dominant and is_recessive fields in some PGS Catalog scoring files (e.g. PGS000802)
Optimize speed and reliability of ancestry_analysis
Fix handling rare cases where PGS has 0 variance (skip)

…Y SLOW list comparisons with set overlaps. Signed-off-by: smlmbrt <sam.a.lambert@gmail.com>

…justment (outputting NAs and adding a WARNING to log). Signed-off-by: smlmbrt <sam.a.lambert@gmail.com>

smlmbrt

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nebfield and others added 5 commits February 22, 2024 10:21

fix handling of dominant / recessive

a607213

bump version

5901b8e

bump version

b1760da

Replace very slow merges with concatenations (of df subsets), and VER…

a713443

…Y SLOW list comparisons with set overlaps. Signed-off-by: smlmbrt <sam.a.lambert@gmail.com>

Handle [rare] case where PGS has 0 variance by abstaining from PGS ad…

4b61fa8

…justment (outputting NAs and adding a WARNING to log). Signed-off-by: smlmbrt <sam.a.lambert@gmail.com>

nebfield marked this pull request as ready for review March 7, 2024 13:53

nebfield requested a review from smlmbrt March 7, 2024 13:53

nebfield merged commit bc8d87f into main Mar 7, 2024
3 checks passed

nebfield deleted the dev branch March 7, 2024 13:55

smlmbrt reviewed Mar 7, 2024

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v0.5.2 #81

v0.5.2 #81

nebfield commented Feb 22, 2024 •

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v0.5.2 #81

v0.5.2 #81

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nebfield commented Feb 22, 2024 • edited Loading

Changelog

Bug fixes

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nebfield commented Feb 22, 2024 •

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