From bb1db8670ddf1028bfb9c6b1cf217bfcceaf93b7 Mon Sep 17 00:00:00 2001
From: smlmbrt <sam.a.lambert@gmail.com>
Date: Fri, 15 Dec 2023 15:41:13 +0000
Subject: [PATCH] Make sure that IID isn't converted to numeric during
 aggreation

Signed-off-by: smlmbrt <sam.a.lambert@gmail.com>
---
 pgscatalog_utils/aggregate/aggregate_scores.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pgscatalog_utils/aggregate/aggregate_scores.py b/pgscatalog_utils/aggregate/aggregate_scores.py
index aa1de89..d57943d 100644
--- a/pgscatalog_utils/aggregate/aggregate_scores.py
+++ b/pgscatalog_utils/aggregate/aggregate_scores.py
@@ -33,7 +33,7 @@ def aggregate(scorefiles: list[str]):
     for i, path in enumerate(scorefiles):
         logger.debug(f"Reading {path}")
         # pandas can automatically detect zst compression, neat!
-        df = (pd.read_table(path)
+        df = (pd.read_table(path, converters={"#IID": str}, header=0)
               .assign(sampleset=path.split('_')[0])
               .set_index(['sampleset', '#IID']))