Merge pull request #75 from PGScatalog/65-read-iids-as-text

Continued fixes re: numeric IDs
PGScatalog · Dec 15, 2023 · 7782112 · 7782112
2 parents 6da7eb0 + bb1db86
commit 7782112
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pgscatalog_utils/aggregate/aggregate_scores.py b/pgscatalog_utils/aggregate/aggregate_scores.py
@@ -33,7 +33,7 @@ def aggregate(scorefiles: list[str]):
     for i, path in enumerate(scorefiles):
         logger.debug(f"Reading {path}")
         # pandas can automatically detect zst compression, neat!
-        df = (pd.read_table(path)
+        df = (pd.read_table(path, converters={"#IID": str}, header=0)
               .assign(sampleset=path.split('_')[0])
               .set_index(['sampleset', '#IID']))