From 37ad5ed949e5612a5f01fe4c3c96da0202daad6f Mon Sep 17 00:00:00 2001
From: Benjamin Wingfield <bwingfield@ebi.ac.uk>
Date: Wed, 31 Jul 2024 11:12:28 +0100
Subject: [PATCH] check if --efo_id is set when workflow starts

---
 lib/WorkflowPgscCalc.groovy | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/lib/WorkflowPgscCalc.groovy b/lib/WorkflowPgscCalc.groovy
index 60c4e9fe..d95c68fb 100755
--- a/lib/WorkflowPgscCalc.groovy
+++ b/lib/WorkflowPgscCalc.groovy
@@ -11,8 +11,8 @@ class WorkflowPgscCalc {
     // Check and validate parameters
     //
     public static void initialise(params, log) {
-        if (![params.scorefile, params.pgs_id, params.trait_efo, params.pgp_id].any()) {
-            Nextflow.error " ERROR: You didn't set any scores to use! Please set --scorefile, --pgs_id, --trait_efo, or --pgp_id"
+        if (![params.scorefile, params.pgs_id, params.trait_efo, params.efo_id, params.pgp_id].any()) {
+            Nextflow.error " ERROR: You didn't set any scores to use! Please set --scorefile, --pgs_id, --efo_id, or --pgp_id"
         }
 
         if (!params.target_build) {