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Improve pca #999

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Improve pca

Improve pca #999

Triggered via pull request May 23, 2024 09:01
@nebfieldnebfield
synchronize #267
improve_pca
Status Cancelled
Total duration 7m 47s
Artifacts 7

ci.yml

on: pull_request
preload_docker  /  docker
3m 45s
preload_docker / docker
preload_singularity  /  singularity
52s
preload_singularity / singularity
preload_ancestry  /  preload_reference
5m 58s
preload_ancestry / preload_reference
Matrix: pytest_workflow_docker
Matrix: standard_test_docker / docker
Matrix: standard_test_docker / singularity
Matrix: pytest_workflow_singularity
Waiting for pending jobs
Matrix: standard_test_singularity / docker
Waiting for pending jobs
Matrix: standard_test_singularity / singularity
Waiting for pending jobs
ancestry_docker  /  docker
ancestry_docker / docker
ancestry_docker  /  singularity
ancestry_docker / singularity
ancestry_vcf_docker  /  docker
ancestry_vcf_docker / docker
ancestry_vcf_docker  /  singularity
ancestry_vcf_docker / singularity
ancestry_singularity  /  docker
ancestry_singularity / docker
ancestry_singularity  /  singularity
ancestry_singularity / singularity
ancestry_vcf_singularity  /  docker
ancestry_vcf_singularity / docker
ancestry_vcf_singularity  /  singularity
ancestry_vcf_singularity / singularity
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49 errors and 5 warnings
preload_singularity / singularity
Process completed with exit code 124.
standard_test_docker / docker (test, docker, 22.10.0)
Process completed with exit code 1.
pytest_workflow_docker (plink2 vcf) / docker
Process completed with exit code 1.
pytest_workflow_docker (plink2 testrelabelbim) / docker
Process completed with exit code 1.
standard_test_docker / docker (test, docker, latest)
Process completed with exit code 1.
pytest_workflow_docker (plink2 testsmallscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testsmallscore) / docker
Process completed with exit code 1.
pytest_workflow_docker (plink2 testscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testscore) / docker
Process completed with exit code 1.
pytest_workflow_docker (plink2 testsmallmultiscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testsmallmultiscore) / docker
Process completed with exit code 1.
pytest_workflow_docker (plink2 testmultiscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testmultiscore) / docker
Process completed with exit code 1.
pytest_workflow_docker (pgscatalog test good and bad accessions GRCh38) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --pgs_id) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testmultiscorefail) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testmultiscorefail) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testrelabelpvar) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testrelabelpvar) / docker
Process completed with exit code 1.
pytest_workflow_docker (test match module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test match module) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with pfile) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with pfile) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
The operation was canceled.
pytest_workflow_docker (test perfect apply score) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test perfect apply score) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
The operation was canceled.
pytest_workflow_docker (test match combine module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test match combine module) / docker
The operation was canceled.
pytest_workflow_docker (test apply score subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test apply score subworkflow) / docker
The operation was canceled.
pytest_workflow_docker (test combine scorefiles module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test combine scorefiles module) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with vcf) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with vcf) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with bfile) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with bfile) / docker
The operation was canceled.
preload_ancestry / preload_reference
The run was canceled by @nebfield.
preload_ancestry / preload_reference
The operation was canceled.
pytest_workflow_docker (plink2 vcf) / docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest_workflow_docker (plink2 vcf) / docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest_workflow_docker (plink2 testrelabelbim) / docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest_workflow_docker (plink2 testrelabelbim) / docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "logs-docker-plink2 testmultiscore", "logs-docker-plink2 testrelabelbim", "logs-docker-plink2 testrelabelpvar", "logs-docker-plink2 testscore", "logs-docker-plink2 testsmallmultiscore", "logs-docker-plink2 testsmallscore", "logs-docker-plink2 vcf". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/

Artifacts

Produced during runtime
Name Size
logs-docker-plink2 testmultiscore Expired
625 KB
logs-docker-plink2 testrelabelbim Expired
622 KB
logs-docker-plink2 testrelabelpvar Expired
629 KB
logs-docker-plink2 testscore Expired
625 KB
logs-docker-plink2 testsmallmultiscore Expired
625 KB
logs-docker-plink2 testsmallscore Expired
625 KB
logs-docker-plink2 vcf Expired
628 KB