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2.0.0-beta.3 #1153

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2.0.0-beta.3

2.0.0-beta.3 #1153

Triggered via pull request August 6, 2024 14:19
@nebfieldnebfield
synchronize #349
match-fix
Status Cancelled
Total duration 14m 0s
Artifacts 5

ci.yml

on: pull_request
preload_docker  /  docker
3m 44s
preload_docker / docker
preload_singularity  /  singularity
1m 21s
preload_singularity / singularity
preload_ancestry  /  preload_reference
10s
preload_ancestry / preload_reference
Matrix: pytest_workflow_docker
Matrix: standard_test_docker / docker
Matrix: standard_test_docker / singularity
Matrix: pytest_workflow_singularity
Matrix: standard_test_singularity / docker
Matrix: standard_test_singularity / singularity
ancestry_docker  /  docker
7m 42s
ancestry_docker / docker
ancestry_docker  /  singularity
0s
ancestry_docker / singularity
ancestry_vcf_docker  /  docker
9m 51s
ancestry_vcf_docker / docker
ancestry_vcf_docker  /  singularity
0s
ancestry_vcf_docker / singularity
ancestry_singularity  /  docker
0s
ancestry_singularity / docker
ancestry_singularity  /  singularity
7m 40s
ancestry_singularity / singularity
ancestry_vcf_singularity  /  docker
0s
ancestry_vcf_singularity / docker
ancestry_vcf_singularity  /  singularity
7m 34s
ancestry_vcf_singularity / singularity
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Annotations

85 errors
pytest_workflow_singularity (plink2 testscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testmultiscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testmultiscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testmultiscorefail) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 vcf) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testrelabelpvar) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testrelabelpvar) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match module) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (test combine scorefiles module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test combine scorefiles module) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testsmallscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testsmallscore) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
The operation was canceled.
pytest_workflow_singularity (test perfect apply score) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test perfect apply score) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
The operation was canceled.
pytest_workflow_singularity (test apply score subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test apply score subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (test match combine module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match combine module) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
The operation was canceled.
pytest_workflow_docker (plink2 testmultiscore) / docker
Process completed with exit code 1.
pytest_workflow_docker (plink2 testsmallmultiscore) / docker
Process completed with exit code 1.
pytest_workflow_docker (test make compatible subworkflow with vcf) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --pgs_id) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --pgs_id) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testrelabelbim) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testrelabelbim) / docker
The operation was canceled.
pytest_workflow_docker (test match combine module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test match combine module) / docker
The operation was canceled.
pytest_workflow_docker (test apply score subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test apply score subworkflow) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testscore) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testsmallscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testsmallscore) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with bfile) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with bfile) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
The operation was canceled.
pytest_workflow_docker (plink2 vcf) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 vcf) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test good and bad accessions GRCh38) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test good and bad accessions GRCh38) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testrelabelpvar) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testrelabelpvar) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with pfile) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with pfile) / docker
The operation was canceled.
pytest_workflow_docker (test combine scorefiles module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test combine scorefiles module) / docker
The operation was canceled.
pytest_workflow_docker (test perfect apply score) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test perfect apply score) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker
The operation was canceled.

Artifacts

Produced during runtime
Name Size
logs-docker-plink2 testmultiscore Expired
111 KB
logs-docker-plink2 testsmallmultiscore Expired
111 KB
logs-singularity-plink2 testmultiscore Expired
112 KB
logs-singularity-plink2 testscore Expired
104 KB
logs-singularity-plink2 testsmallmultiscore Expired
112 KB