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Added use_pos param documentation
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fyvon committed Apr 8, 2024
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Expand Up @@ -32,3 +32,4 @@ qc_ref_genome.py [-h] [--scoring_file SCORING_FILE] [--ref {auto,37,38}] [--n_re
* *ref*: allowed values: **auto**, **37**, **38**. If set to auto, the reference genome found in the header of the scoring file will be used.
* *n_requests*: maximum number of requests (or number of samples) sent to the Ensembl API. Default: **1**
* *flip*: default is off. If flip is on, all variants will be tested against the reverse strand if using coordinates without rsID.
* *use_pos*: enforce using variant coordinates even if rsIDs are present.

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