libpetab-python v0.1.24

• GHA: Regular package installation instead of -e by @dweindl in #106
• Fix unclosed file warnings by @dilpath in #107
• Generation of condition-specific SBML models by @dweindl in #108

Full Changelog: v0.1.23...v0.1.24

libpetab-python v0.1.23

• Added command line interface for plotting by @dweindl in #98
• Fixed petab.visualize.data_overview.create_report by @dweindl in #96, #104
• Vis: Fixed cropped errorbars by @dweindl in #99
• Fixed pandas deprecation warning by @dweindl in #103

... and other changes by @plakrisenko, @dweindl

Full Changelog: v0.1.22...v0.1.23

libpetab-python v0.1.22

• Allow zero bounds for log parameters by @FFroehlich in #83
• Adapt to Matplotlib 3.5 by @dweindl in #86
• Allow specifying file format for visualization by @dweindl in #85
• Visualization: Don't mess with rcParams by @dweindl in #90
• Linter: Check condition IDs are unique by @dweindl in #92
• Add support for pathlib for reading PEtab tables by @dweindl, @dilpath in #93, #91
• Run tests also on Python 3.10 by @dweindl in #88
• Fix remote file retrieval on Windows @dweindl, @dilpath in #91
• Fix test suite for Windows @dweindl, @dilpath in #91

Full Changelog: v0.1.21...v0.1.22

libpetab-python v0.1.21

• PEtab spec compliance: measurements must now be not null, and numeric (#76)
  • Users who relied on null measurements for simulation/plotting are
    recommended to store these dummy simulation-only measurements in an
    additional file, separate to real measurements used for calibration
• Improve Unicode support (#79, fixes #77)
• Convenience methods to scale or unscale a parameter vector (#78)

libpetab-python v0.1.20

• Visualization: plot additional simulation points (not only at measurements) (#62), bugfix (#68)
• Documentation: visualization, observables, simulation, Sphinx fixes (#67)
• Lint: ensure valid parameter IDs in observable and noise parameters (#69)
• Convenience method for quick export of a PEtab problem to files (#71)

PEtab v0.1.19

• Visualization: refactoring (#58) including various bug fixes
• Validation: Fixed detection of missing observable/noise parameter overrides
  (#64)
• Optional relative paths in generated YAML (#57)

PEtab v0.1.18

• Fixed various documentation issues
• Parameter mapping: Added option to ignore time-point specific
  noiseParameters (#51)

PEtab v0.1.17

• Updated package URL
• Fixed noise formula check (#49)
• Fixed override check and add noise formula check (#48)
• Fixed timepoint override check (#47)

PEtab v0.1.16

Update python version for pypi deployment, no further changes

PEtab v0.1.15

NOTE: The original PEtab format + petab package repository has been split up (#41). This repository now only contains the petab Python package. The PEtab specifications and related information are available at https://github.com/PEtab-dev/PEtab.

• Improved petab.flatten_timepoint_specific_output_overrides (#42)
• Validator: output message in case of successful check is added (PEtab-dev/PEtab#487)
• Update how-to-cite (Closes PEtab-dev/PEtab#432) (PEtab-dev/PEtab#509)
• Broadcast and mapping of scale and unscale functions (PEtab-dev/PEtab#505)
• Update Python requirement (3.7.1) (PEtab-dev/PEtab#502)
• Fix petab.get_required_parameters_for_parameter_table (#43)
• Fix petab.measurement_table_has_timepoint_specific_mappings (#44)