Minimum number of colonization events

The minimum number of colonization events calculated with PAICE is based on the haplotype distribution. This approach calculates the number of colonization events required to explain the observed haplotype distribution in the island-like system. To perform it, use the colonization function:

col <- colonization(CmonsData, CmonsNetwork)
print(col)
summary(col)

Types of colonization events according to Coello et al. (2022)